Scaphirhynchus albus
Pallid sturgeon
GC content
46.63%
Whole genome
Non-coding
861 bp
D-loop 780 bp
Where Pallid sturgeon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pallid sturgeon has the 32nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,494 bp
- GC skew (G − C) / (G + C)
- −0.286
- AT skew (A − T) / (A + T)
- +0.120
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,494 bp
Protein-coding11,412 bp
12S rRNA961 bp
16S rRNA1,702 bp
All tRNA1,558 bp
D-loop780 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.80% | −0.391 | +0.084 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.94% | −0.449 | +0.202 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 48.39% | −0.197 | −0.062 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.88% | −0.218 | +0.107 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.412 | +0.100 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.54% | −0.410 | +0.011 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.90% | −0.245 | −0.012 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.313 | −0.071 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.54% | −0.371 | −0.043 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.34% | −0.344 | +0.082 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 45.22% | −0.424 | +0.126 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.28% | −0.484 | +0.600 | |||||
| CYTBCytochrome b | 1,141 bp | 48.38% | −0.359 | +0.032 | |||||
| 12S rRNA12S ribosomal RNA | 961 bp | 50.05% | −0.114 | +0.258 | |||||
| 16S rRNA16S ribosomal RNA | 1,702 bp | 44.77% | −0.100 | +0.291 | |||||
| D-loopControl region (D-loop) | 780 bp | 38.97% | −0.329 | +0.101 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU97
UUC122
Leu L16.7%
UUA75
UUG25
CUU79
CUC131
CUA241
CUG84
Ile I7.5%
AUU129
AUC155
Met M4.5%
AUA107
AUG65
Val V5.9%
GUU35
GUC59
GUA83
GUG46
Ser S6.2%
UCU30
UCC87
UCA60
UCG8
AGU6
AGC44
Pro P5.6%
CCU26
CCC91
CCA88
CCG8
Thr T8.2%
ACU36
ACC137
ACA121
ACG19
Ala A8.7%
GCU39
GCC174
GCA102
GCG18
Tyr Y3.1%
UAU35
UAC83
His H2.7%
CAU17
CAC85
Gln Q2.8%
CAA94
CAG11
Asn N3.4%
AAU28
AAC102
Lys K2.1%
AAA71
AAG8
Asp D2.0%
GAU16
GAC59
Glu E2.7%
GAA76
GAG25
Cys C0.7%
UGU8
UGC19
Trp W3.1%
UGA97
UGG22
Arg R2.0%
CGU5
CGC15
CGA44
CGG11
Gly G6.4%
GGU21
GGC90
GGA90
GGG43
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_030324.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,029 | 961 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,030 | 1,100 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,802 | 1,702 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,803 | 2,877 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,878 | 3,852 | 975 bp | + | 47.8% |
| tRNA-Ile | Transfer RNA | 3,862 | 3,932 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,932 | 4,002 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,002 | 4,071 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,072 | 5,116 | 1,045 bp | + | 47.9% |
| tRNA-Trp | Transfer RNA | 5,117 | 5,187 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,189 | 5,257 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,259 | 5,331 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,366 | 5,432 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,433 | 5,503 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,505 | 7,058 | 1,554 bp | + | 48.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,066 | 7,136 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,145 | 7,216 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,231 | 7,921 | 691 bp | + | 45.9% |
| tRNA-Lys | Transfer RNA | 7,922 | 7,995 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,997 | 8,164 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,155 | 8,838 | 684 bp | + | 48.5% |
| COX3 | Protein-coding gene | 8,838 | 9,622 | 785 bp | + | 47.9% |
| tRNA-Gly | Transfer RNA | 9,623 | 9,695 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,696 | 10,044 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 10,045 | 10,114 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,115 | 10,411 | 297 bp | + | 53.5% |
| ND4 | Protein-coding gene | 10,405 | 11,785 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,786 | 11,854 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,855 | 11,922 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,923 | 11,995 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,996 | 13,837 | 1,842 bp | + | 45.2% |
| ND6 | Protein-coding gene | 13,834 | 14,355 | 522 bp | − | 48.3% |
| tRNA-Glu | Transfer RNA | 14,356 | 14,425 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,428 | 15,568 | 1,141 bp | + | 48.4% |
| tRNA-Thr | Transfer RNA | 15,569 | 15,641 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,645 | 15,714 | 70 bp | − | – |
| D-loop | Control region | 15,715 | 16,494 | 780 bp | – | 39.0% |