MitoAge

Scardinius erythrophthalmus

Pearl roach

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Maximum lifespan
19 yr
AnAge record
mtDNA size
16,607 bp
RefSeq NC_031561.1
GC content
44.93%
Whole genome
Non-coding
995 bp
D-loop 930 bp

Where Pearl roach sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pearl roach has the 994th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pearl roach
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,607 bp
GC skew (G − C) / (G + C)
−0.192
AT skew (A − T) / (A + T)
+0.038

Life history

Maximum lifespan
19 years
Adult weight
1.2 kg
Female sexual maturity
4 years
Male sexual maturity
3 years

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03984)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,607 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,691 bp
All tRNA1,561 bp
D-loop930 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp24.0%28.4%17.9%29.6%47.59%−0.246−0.084
ND2NADH dehydrogenase subunit 21,045 bp25.8%26.3%17.6%30.2%47.85%−0.264−0.009
COX1Cytochrome c oxidase subunit I1,551 bp26.2%30.4%18.6%24.9%43.46%−0.145−0.074
COX2Cytochrome c oxidase subunit II691 bp28.8%27.5%17.5%26.2%43.71%−0.199+0.023
ATP8ATP synthase F0 subunit 8165 bp35.8%22.4%12.1%29.7%41.82%−0.420+0.229
ATP6ATP synthase F0 subunit 6683 bp28.3%28.7%14.3%28.7%43.05%−0.333−0.008
COX3Cytochrome c oxidase subunit III784 bp26.4%27.9%18.1%27.6%45.66%−0.207−0.028
ND3NADH dehydrogenase subunit 3349 bp24.9%31.5%17.2%26.4%43.55%−0.211−0.117
ND4LNADH dehydrogenase subunit 4L297 bp26.9%28.3%15.5%29.3%44.78%−0.308−0.024
ND4NADH dehydrogenase subunit 41,382 bp26.1%27.9%17.4%28.6%45.95%−0.244−0.033
ND5NADH dehydrogenase subunit 51,836 bp28.5%27.0%16.0%28.6%44.55%−0.284+0.028
ND6NADH dehydrogenase subunit 6522 bp36.0%16.5%16.1%31.2%47.41%−0.320+0.372
CYTBCytochrome b1,141 bp25.8%28.6%17.3%28.4%45.66%−0.244−0.052
12S rRNA12S ribosomal RNA957 bp30.1%19.5%23.9%26.4%50.37%−0.050+0.213
16S rRNA16S ribosomal RNA1,691 bp33.9%21.5%22.2%22.4%44.59%−0.005+0.223
D-loopControl region (D-loop)930 bp32.8%31.8%14.1%21.3%35.38%−0.204+0.015

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU90
UUC137
Leu L16.3%
UUA101
UUG32
CUU124
CUC112
CUA186
CUG66
Ile I7.0%
AUU174
AUC93
Met M4.7%
AUA100
AUG77
Val V6.8%
GUU69
GUC53
GUA107
GUG30
Ser S6.4%
UCU52
UCC51
UCA62
UCG18
AGU14
AGC45
Pro P5.6%
CCU51
CCC52
CCA97
CCG14
Thr T7.7%
ACU51
ACC98
ACA119
ACG26
Ala A9.0%
GCU53
GCC145
GCA118
GCG28
Tyr Y2.9%
UAU50
UAC62
His H2.7%
CAU31
CAC72
Gln Q2.7%
CAA74
CAG27
Asn N3.0%
AAU46
AAC69
Lys K2.0%
AAA54
AAG23
Asp D2.0%
GAU23
GAC53
Glu E2.7%
GAA64
GAG37
Cys C0.7%
UGU13
UGC13
Trp W3.1%
UGA93
UGG26
Arg R2.0%
CGU8
CGC13
CGA38
CGG17
Gly G6.5%
GGU40
GGC55
GGA101
GGG50
Stop 0.2%
UAA3
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_031561.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,026957 bp+50.4%
tRNA-ValTransfer RNA1,0271,09872 bp+–
16S rRNARibosomal RNA1,0992,7891,691 bp+44.6%
tRNA-Leu (UUR)Transfer RNA2,7902,86576 bp+–
ND1Protein-coding gene2,8673,841975 bp+47.6%
tRNA-IleTransfer RNA3,8463,91772 bp+–
tRNA-GlnTransfer RNA3,9163,98671 bp−–
tRNA-MetTransfer RNA3,9884,05669 bp+–
ND2Protein-coding gene4,0575,1011,045 bp+47.9%
tRNA-TrpTransfer RNA5,1025,17271 bp+–
tRNA-AlaTransfer RNA5,1745,24269 bp−–
tRNA-AsnTransfer RNA5,2445,31673 bp−–
tRNA-CysTransfer RNA5,3495,41567 bp−–
tRNA-TyrTransfer RNA5,4175,48771 bp−–
COX1Protein-coding gene5,4897,0391,551 bp+43.5%
tRNA-Ser (UCN)Transfer RNA7,0407,11071 bp−–
tRNA-AspTransfer RNA7,1147,18774 bp+–
COX2Protein-coding gene7,2027,892691 bp+43.7%
tRNA-LysTransfer RNA7,8937,96876 bp+–
ATP8Protein-coding gene7,9708,134165 bp+41.8%
ATP6Protein-coding gene8,1288,810683 bp+43.1%
COX3Protein-coding gene8,8119,594784 bp+45.7%
tRNA-GlyTransfer RNA9,5959,66672 bp+–
ND3Protein-coding gene9,66710,015349 bp+43.6%
tRNA-ArgTransfer RNA10,01610,08469 bp+–
ND4LProtein-coding gene10,08510,381297 bp+44.8%
ND4Protein-coding gene10,37511,7561,382 bp+46.0%
tRNA-HisTransfer RNA11,75711,82569 bp+–
tRNA-Ser (AGY)Transfer RNA11,82611,89469 bp+–
tRNA-Leu (CUN)Transfer RNA11,89611,96873 bp+–
ND5Protein-coding gene11,96913,8041,836 bp+44.6%
ND6Protein-coding gene13,80114,322522 bp−47.4%
tRNA-GluTransfer RNA14,32314,39169 bp−–
CYTBProtein-coding gene14,39615,5361,141 bp+45.7%
tRNA-ThrTransfer RNA15,53715,60872 bp+–
tRNA-ProTransfer RNA15,60815,67770 bp−–
D-loopControl region15,67816,607930 bp–35.4%

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