Scarus ghobban
Flame parrotfish
GC content
46.46%
Whole genome
Non-coding
1,080 bp
D-loop 916 bp
Where Flame parrotfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Flame parrotfish has the 1,345th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,676 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.042
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,676 bp
Protein-coding11,405 bp
12S rRNA953 bp
16S rRNA1,685 bp
All tRNA1,553 bp
D-loop916 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 48.05% | −0.340 | −0.030 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.42% | −0.423 | −0.006 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.71% | −0.232 | −0.075 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.283 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.421 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.91% | −0.389 | −0.054 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.90% | −0.266 | −0.037 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 45.74% | −0.292 | −0.194 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.385 | −0.091 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,380 bp | 48.19% | −0.402 | +0.007 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.35% | −0.379 | +0.031 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.433 | +0.425 | |||||
| CYTBCytochrome b | 1,141 bp | 46.10% | −0.319 | −0.054 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 48.37% | −0.076 | +0.187 | |||||
| 16S rRNA16S ribosomal RNA | 1,685 bp | 45.64% | −0.092 | +0.245 | |||||
| D-loopControl region (D-loop) | 916 bp | 39.08% | −0.291 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU90
UUC143
Leu L16.8%
UUA70
UUG22
CUU158
CUC164
CUA174
CUG50
Ile I6.8%
AUU124
AUC133
Met M4.1%
AUA78
AUG78
Val V6.4%
GUU77
GUC71
GUA69
GUG26
Ser S6.5%
UCU55
UCC68
UCA66
UCG12
AGU8
AGC40
Pro P5.8%
CCU53
CCC90
CCA68
CCG8
Thr T7.8%
ACU47
ACC122
ACA113
ACG16
Ala A9.2%
GCU60
GCC141
GCA135
GCG13
Tyr Y3.1%
UAU26
UAC93
His H2.8%
CAU27
CAC79
Gln Q2.4%
CAA82
CAG11
Asn N3.1%
AAU40
AAC78
Lys K2.0%
AAA67
AAG8
Asp D2.0%
GAU17
GAC58
Glu E2.7%
GAA88
GAG14
Cys C0.8%
UGU12
UGC17
Trp W3.1%
UGA95
UGG22
Arg R2.0%
CGU9
CGC15
CGA42
CGG11
Gly G6.5%
GGU27
GGC86
GGA87
GGG46
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_011599.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,021 | 953 bp | + | 48.4% |
| tRNA-Val | Transfer RNA | 1,022 | 1,092 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,777 | 1,685 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,825 | 972 bp | + | 48.1% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Met | Transfer RNA | 3,905 | 3,974 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,985 | 4,056 | 72 bp | − | – |
| ND2 | Protein-coding gene | 4,122 | 5,166 | 1,045 bp | + | 48.4% |
| tRNA-Trp | Transfer RNA | 5,167 | 5,237 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,241 | 5,309 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,313 | 5,385 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,427 | 5,494 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,495 | 5,564 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,566 | 7,116 | 1,551 bp | + | 47.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,117 | 7,187 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,192 | 7,264 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,270 | 7,960 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,961 | 8,034 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,036 | 8,203 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,194 | 8,877 | 684 bp | + | 45.9% |
| COX3 | Protein-coding gene | 8,877 | 9,661 | 785 bp | + | 47.9% |
| tRNA-Gly | Transfer RNA | 9,662 | 9,732 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,734 | 10,085 | 352 bp | + | 45.7% |
| tRNA-Arg | Transfer RNA | 10,086 | 10,154 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,155 | 10,451 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,445 | 11,824 | 1,380 bp | + | 48.2% |
| tRNA-His | Transfer RNA | 11,827 | 11,895 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,895 | 11,965 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,976 | 12,047 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,048 | 13,886 | 1,839 bp | + | 45.4% |
| ND6 | Protein-coding gene | 13,883 | 14,404 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,406 | 14,473 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,479 | 15,619 | 1,141 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,620 | 15,689 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,691 | 15,760 | 70 bp | + | – |
| D-loop | Control region | 15,761 | 16,676 | 916 bp | – | 39.1% |