Scarus rubroviolaceus
Bicolor parrotfish
GC content
46.44%
Whole genome
Non-coding
1,085 bp
D-loop 921 bp
Where Bicolor parrotfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bicolor parrotfish has the 898th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,681 bp
- GC skew (G − C) / (G + C)
- −0.273
- AT skew (A − T) / (A + T)
- +0.038
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,681 bp
Protein-coding11,405 bp
12S rRNA952 bp
16S rRNA1,686 bp
All tRNA1,553 bp
D-loop921 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 48.46% | −0.333 | −0.034 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.52% | −0.432 | +0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.00% | −0.229 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.280 | −0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.500 | +0.130 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.22% | −0.368 | −0.064 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.01% | −0.263 | −0.029 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 46.59% | −0.305 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.338 | −0.132 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,380 bp | 46.88% | −0.388 | −0.015 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.68% | −0.390 | +0.027 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.397 | +0.386 | |||||
| CYTBCytochrome b | 1,141 bp | 46.80% | −0.277 | −0.081 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.11% | −0.074 | +0.190 | |||||
| 16S rRNA16S ribosomal RNA | 1,686 bp | 45.67% | −0.094 | +0.245 | |||||
| D-loopControl region (D-loop) | 921 bp | 39.96% | −0.299 | +0.020 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU95
UUC136
Leu L16.9%
UUA69
UUG23
CUU165
CUC156
CUA181
CUG50
Ile I6.9%
AUU129
AUC135
Met M4.0%
AUA78
AUG75
Val V6.1%
GUU79
GUC60
GUA69
GUG23
Ser S6.7%
UCU52
UCC65
UCA69
UCG16
AGU10
AGC43
Pro P5.7%
CCU56
CCC93
CCA62
CCG7
Thr T7.7%
ACU53
ACC113
ACA115
ACG13
Ala A9.4%
GCU73
GCC131
GCA130
GCG22
Tyr Y3.2%
UAU28
UAC92
His H2.8%
CAU24
CAC83
Gln Q2.4%
CAA82
CAG9
Asn N3.1%
AAU31
AAC86
Lys K2.0%
AAA66
AAG10
Asp D2.0%
GAU23
GAC52
Glu E2.7%
GAA84
GAG19
Cys C0.7%
UGU8
UGC20
Trp W3.1%
UGA90
UGG28
Arg R2.0%
CGU9
CGC17
CGA41
CGG9
Gly G6.4%
GGU22
GGC92
GGA84
GGG44
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_011343.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 1,021 | 1,091 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,777 | 1,686 bp | + | 45.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,825 | 972 bp | + | 48.5% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Met | Transfer RNA | 3,905 | 3,974 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,985 | 4,056 | 72 bp | − | – |
| ND2 | Protein-coding gene | 4,122 | 5,166 | 1,045 bp | + | 48.5% |
| tRNA-Trp | Transfer RNA | 5,167 | 5,237 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,241 | 5,309 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,313 | 5,385 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,426 | 5,493 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,494 | 5,563 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,565 | 7,115 | 1,551 bp | + | 47.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,116 | 7,186 | 71 bp | + | – |
| tRNA-Asp | Transfer RNA | 7,191 | 7,263 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,270 | 7,960 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,961 | 8,034 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,036 | 8,203 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,194 | 8,877 | 684 bp | + | 47.2% |
| COX3 | Protein-coding gene | 8,877 | 9,661 | 785 bp | + | 47.0% |
| tRNA-Gly | Transfer RNA | 9,662 | 9,733 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,735 | 10,086 | 352 bp | + | 46.6% |
| tRNA-Arg | Transfer RNA | 10,087 | 10,154 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,155 | 10,451 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,445 | 11,824 | 1,380 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,827 | 11,895 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,895 | 11,965 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,976 | 12,047 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,048 | 13,886 | 1,839 bp | + | 45.7% |
| ND6 | Protein-coding gene | 13,883 | 14,404 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,406 | 14,473 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,479 | 15,619 | 1,141 bp | + | 46.8% |
| tRNA-Thr | Transfer RNA | 15,620 | 15,689 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,691 | 15,760 | 70 bp | + | – |
| D-loop | Control region | 15,761 | 16,681 | 921 bp | – | 40.0% |