Scatophagus argus
Spotted scat
GC content
44.39%
Whole genome
Non-coding
1,140 bp
D-loop 995 bp
Where Spotted scat sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spotted scat has the 2,102nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,771 bp
- GC skew (G − C) / (G + C)
- −0.285
- AT skew (A − T) / (A + T)
- +0.008
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,771 bp
Protein-coding11,426 bp
12S rRNA953 bp
16S rRNA1,709 bp
All tRNA1,552 bp
D-loop995 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.87% | −0.361 | −0.112 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.85% | −0.480 | −0.042 | |||||
| COX1Cytochrome c oxidase subunit I | 1,563 bp | 44.40% | −0.187 | −0.125 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.39% | −0.273 | +0.017 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.595 | +0.043 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.15% | −0.384 | −0.079 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.82% | −0.267 | −0.088 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.320 | −0.194 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.401 | −0.133 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,387 bp | 45.06% | −0.306 | −0.052 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.30% | −0.400 | −0.012 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.02% | −0.396 | +0.359 | |||||
| CYTBCytochrome b | 1,143 bp | 47.07% | −0.368 | −0.084 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 47.43% | −0.084 | +0.154 | |||||
| 16S rRNA16S ribosomal RNA | 1,709 bp | 44.65% | −0.125 | +0.205 | |||||
| D-loopControl region (D-loop) | 995 bp | 31.56% | −0.312 | +0.063 |
Codon usage
Counts per codon, darker is more frequent3,814 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU108
UUC133
Leu L17.7%
UUA91
UUG27
CUU174
CUC154
CUA171
CUG57
Ile I7.1%
AUU149
AUC122
Met M4.3%
AUA102
AUG61
Val V5.7%
GUU79
GUC55
GUA60
GUG23
Ser S6.3%
UCU63
UCC79
UCA53
UCG5
AGU6
AGC35
Pro P5.6%
CCU71
CCC72
CCA60
CCG11
Thr T7.8%
ACU60
ACC120
ACA100
ACG16
Ala A9.0%
GCU79
GCC148
GCA97
GCG18
Tyr Y2.8%
UAU44
UAC64
His H2.8%
CAU41
CAC65
Gln Q2.5%
CAA80
CAG17
Asn N3.5%
AAU50
AAC82
Lys K2.0%
AAA70
AAG5
Asp D1.8%
GAU20
GAC49
Glu E2.6%
GAA86
GAG13
Cys C0.7%
UGU3
UGC23
Trp W3.1%
UGA104
UGG15
Arg R2.0%
CGU17
CGC10
CGA41
CGG8
Gly G6.3%
GGU32
GGC83
GGA79
GGG46
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_059324.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,021 | 953 bp | + | 47.4% |
| tRNA-Val | Transfer RNA | 1,022 | 1,093 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,802 | 1,709 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,803 | 2,876 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,947 | 3,921 | 975 bp | + | 46.9% |
| tRNA-Ile | Transfer RNA | 3,926 | 3,995 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,004 | 4,075 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 4,075 | 4,143 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,145 | 5,189 | 1,045 bp | + | 47.9% |
| tRNA-Trp | Transfer RNA | 5,190 | 5,261 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,262 | 5,330 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,334 | 5,406 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,443 | 5,509 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,510 | 5,579 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,581 | 7,143 | 1,563 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,135 | 7,205 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,209 | 7,280 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,287 | 7,977 | 691 bp | + | 41.4% |
| tRNA-Lys | Transfer RNA | 7,978 | 8,052 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,055 | 8,222 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,213 | 8,896 | 684 bp | + | 44.2% |
| COX3 | Protein-coding gene | 8,896 | 9,680 | 785 bp | + | 43.8% |
| tRNA-Gly | Transfer RNA | 9,681 | 9,750 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,751 | 10,099 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 10,100 | 10,168 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,169 | 10,465 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,459 | 11,845 | 1,387 bp | + | 45.1% |
| tRNA-His | Transfer RNA | 11,846 | 11,914 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,915 | 11,982 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,986 | 12,057 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,058 | 13,896 | 1,839 bp | + | 45.3% |
| ND6 | Protein-coding gene | 13,893 | 14,414 | 522 bp | − | 45.0% |
| tRNA-Glu | Transfer RNA | 14,419 | 14,487 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,492 | 15,634 | 1,143 bp | + | 47.1% |
| tRNA-Thr | Transfer RNA | 15,635 | 15,706 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,706 | 15,776 | 71 bp | − | – |
| D-loop | Control region | 15,777 | 16,771 | 995 bp | – | 31.6% |