Schizopygopsis younghusbandi
GC content
44.30%
Whole genome
Non-coding
1,084 bp
D-loop 938 bp
Where Schizopygopsis younghusbandi sits among 2,335 species
Whole-genome GC content against maximum lifespan. Schizopygopsis younghusbandi has the 1,112th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,674 bp
- GC skew (G − C) / (G + C)
- −0.176
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,674 bp
Protein-coding11,391 bp
12S rRNA958 bp
16S rRNA1,682 bp
All tRNA1,559 bp
D-loop938 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.46% | −0.249 | −0.088 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.33% | −0.279 | +0.011 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.20% | −0.152 | −0.103 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.207 | +0.032 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 39.39% | −0.262 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.47% | −0.267 | −0.053 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.61% | −0.184 | −0.054 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.195 | −0.097 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.80% | −0.237 | −0.127 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.23% | −0.179 | −0.064 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 42.82% | −0.255 | −0.018 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.296 | +0.360 | |||||
| CYTBCytochrome b | 1,141 bp | 43.47% | −0.226 | −0.082 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 49.79% | −0.044 | +0.177 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 44.47% | −0.032 | +0.259 | |||||
| D-loopControl region (D-loop) | 938 bp | 36.99% | −0.176 | −0.012 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU122
UUC109
Leu L16.3%
UUA106
UUG44
CUU136
CUC89
CUA187
CUG57
Ile I7.1%
AUU189
AUC82
Met M4.6%
AUA100
AUG75
Val V6.8%
GUU80
GUC35
GUA100
GUG42
Ser S6.3%
UCU43
UCC52
UCA71
UCG20
AGU12
AGC43
Pro P5.5%
CCU46
CCC58
CCA89
CCG17
Thr T7.7%
ACU60
ACC102
ACA108
ACG23
Ala A9.2%
GCU68
GCC141
GCA115
GCG24
Tyr Y2.9%
UAU71
UAC41
His H2.7%
CAU49
CAC54
Gln Q2.6%
CAA80
CAG18
Asn N3.0%
AAU49
AAC64
Lys K2.0%
AAA55
AAG22
Asp D2.0%
GAU29
GAC46
Glu E2.7%
GAA82
GAG21
Cys C0.7%
UGU10
UGC15
Trp W3.1%
UGA90
UGG28
Arg R2.0%
CGU10
CGC14
CGA36
CGG15
Gly G6.6%
GGU38
GGC65
GGA88
GGG59
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_021409.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,781 | 1,682 bp | + | 44.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,857 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 46.5% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,093 | 1,045 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,406 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,476 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 43.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,029 | 7,099 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,174 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,188 | 7,878 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,879 | 7,954 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,120 | 165 bp | + | 39.4% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 39.5% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,653 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,654 | 10,002 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 10,003 | 10,072 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,073 | 10,369 | 297 bp | + | 46.8% |
| ND4 | Protein-coding gene | 10,363 | 11,743 | 1,381 bp | + | 43.2% |
| tRNA-His | Transfer RNA | 11,744 | 11,812 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,881 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,883 | 11,955 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,782 | 1,824 bp | + | 42.8% |
| ND6 | Protein-coding gene | 13,779 | 14,300 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,301 | 14,369 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,374 | 15,514 | 1,141 bp | + | 43.5% |
| tRNA-Thr | Transfer RNA | 15,515 | 15,586 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,667 | 15,736 | 70 bp | − | – |
| D-loop | Control region | 15,737 | 16,674 | 938 bp | – | 37.0% |