Scomber scombrus

Atlantic mackerel

Maximum lifespan

17 yr

AnAge record

mtDNA size

16,560 bp

RefSeq NC_006398.1

GC content

46.94%

Whole genome

Non-coding

929 bp

D-loop 864 bp

Where Atlantic mackerel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Atlantic mackerel has the 1,089th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,560 bp

GC skew (G − C) / (G + C): −0.265
AT skew (A − T) / (A + T): +0.040

Life history

Maximum lifespan: 17 years
Adult weight: 1.9 kg
Female sexual maturity: 2.1 years
Male sexual maturity: 2.1 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04356)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,560 bp

Protein-coding11,416 bp

12S rRNA957 bp

16S rRNA1,713 bp

All tRNA1,554 bp

D-loop864 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Scomber scombrus genes

ND1NADH dehydrogenase subunit 1	975 bp	24.6%	27.5%	15.8%	32.1%	47.90%	−0.340	−0.055
ND2NADH dehydrogenase subunit 2	1,046 bp	25.6%	24.5%	14.7%	35.2%	49.90%	−0.410	+0.023
COX1Cytochrome c oxidase subunit I	1,560 bp	24.3%	28.7%	18.8%	28.2%	47.05%	−0.199	−0.082
COX2Cytochrome c oxidase subunit II	691 bp	27.1%	25.5%	17.5%	30.0%	47.47%	−0.262	+0.030
ATP8ATP synthase F0 subunit 8	168 bp	31.5%	22.6%	13.1%	32.7%	45.83%	−0.429	+0.165
ATP6ATP synthase F0 subunit 6	684 bp	26.9%	27.8%	12.6%	32.7%	45.32%	−0.445	−0.016
COX3Cytochrome c oxidase subunit III	785 bp	25.6%	26.0%	17.6%	30.8%	48.41%	−0.274	−0.007
ND3NADH dehydrogenase subunit 3	349 bp	18.9%	28.9%	15.5%	36.7%	52.15%	−0.407	−0.210
ND4LNADH dehydrogenase subunit 4L	297 bp	20.9%	26.6%	16.5%	36.0%	52.53%	−0.372	−0.121
ND4NADH dehydrogenase subunit 4	1,381 bp	26.6%	26.4%	15.0%	32.0%	47.00%	−0.362	+0.005
ND5NADH dehydrogenase subunit 5	1,839 bp	26.7%	26.4%	14.7%	32.2%	46.87%	−0.374	+0.005
ND6NADH dehydrogenase subunit 6	522 bp	37.4%	15.5%	16.7%	30.5%	47.13%	−0.293	+0.413
CYTBCytochrome b	1,141 bp	23.4%	28.0%	17.2%	31.4%	48.55%	−0.292	−0.090
12S rRNA12S ribosomal RNA	957 bp	30.0%	21.2%	21.8%	27.0%	48.80%	−0.105	+0.171
16S rRNA16S ribosomal RNA	1,713 bp	33.2%	20.8%	20.5%	25.5%	45.94%	−0.108	+0.229
D-loopControl region (D-loop)	864 bp	33.1%	29.9%	15.9%	21.2%	37.04%	−0.144	+0.051

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU90

UUC139

Leu L17.5%

UUA52

UUG18

CUU142

CUC185

CUA212

CUG57

Ile I6.5%

AUU130

AUC117

Met M4.0%

AUA56

AUG98

Val V6.2%

GUU76

GUC71

GUA71

GUG19

Ser S6.2%

UCU49

UCC70

UCA55

UCG10

AGU9

AGC45

Pro P5.8%

CCU52

CCC100

CCA58

CCG11

Thr T7.8%

ACU52

ACC111

ACA113

ACG20

Ala A9.4%

GCU63

GCC161

GCA115

GCG18

Tyr Y3.0%

UAU34

UAC81

His H2.8%

CAU26

CAC80

Gln Q2.4%

CAA73

CAG17

Asn N3.2%

AAU37

AAC85

Lys K1.9%

AAA67

AAG5

Asp D2.0%

GAU19

GAC59

Glu E2.8%

GAA81

GAG25

Cys C0.7%

UGU11

UGC17

Trp W3.2%

UGA109

UGG12

Arg R2.0%

CGU6

CGC13

CGA45

CGG13

Gly G6.4%

GGU36

GGC81

GGA92

GGG34

Stop 0.2%

UAA5

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_006398.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Scomber scombrus (NC_006398.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,026	957 bp	+	48.8%
tRNA-Val	Transfer RNA	1,027	1,098	72 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,811	1,713 bp	+	45.9%
tRNA-Leu (UUR)	Transfer RNA	2,812	2,885	74 bp	+	–
ND1	Protein-coding gene	2,886	3,860	975 bp	+	47.9%
tRNA-Ile	Transfer RNA	3,866	3,937	72 bp	+	–
tRNA-Gln	Transfer RNA	3,937	4,007	71 bp	−	–
tRNA-Met	Transfer RNA	4,007	4,076	70 bp	+	–
ND2	Protein-coding gene	4,077	5,122	1,046 bp	+	49.9%
tRNA-Trp	Transfer RNA	5,123	5,193	71 bp	+	–
tRNA-Ala	Transfer RNA	5,196	5,264	69 bp	−	–
tRNA-Asn	Transfer RNA	5,266	5,338	73 bp	−	–
tRNA-Cys	Transfer RNA	5,374	5,441	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,442	5,508	67 bp	−	–
COX1	Protein-coding gene	5,510	7,069	1,560 bp	+	47.1%
tRNA-Ser (UCN)	Transfer RNA	7,061	7,132	72 bp	−	–
tRNA-Asp	Transfer RNA	7,136	7,207	72 bp	+	–
COX2	Protein-coding gene	7,216	7,906	691 bp	+	47.5%
tRNA-Lys	Transfer RNA	7,907	7,980	74 bp	+	–
ATP8	Protein-coding gene	7,982	8,149	168 bp	+	45.8%
ATP6	Protein-coding gene	8,140	8,823	684 bp	+	45.3%
COX3	Protein-coding gene	8,823	9,607	785 bp	+	48.4%
tRNA-Gly	Transfer RNA	9,608	9,679	72 bp	+	–
ND3	Protein-coding gene	9,680	10,028	349 bp	+	52.2%
tRNA-Arg	Transfer RNA	10,029	10,097	69 bp	+	–
ND4L	Protein-coding gene	10,098	10,394	297 bp	+	52.5%
ND4	Protein-coding gene	10,388	11,768	1,381 bp	+	47.0%
tRNA-His	Transfer RNA	11,769	11,839	71 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,840	11,907	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,912	11,984	73 bp	+	–
ND5	Protein-coding gene	11,986	13,824	1,839 bp	+	46.9%
ND6	Protein-coding gene	13,821	14,342	522 bp	−	47.1%
tRNA-Glu	Transfer RNA	14,343	14,411	69 bp	−	–
CYTB	Protein-coding gene	14,416	15,556	1,141 bp	+	48.6%
tRNA-Thr	Transfer RNA	15,557	15,628	72 bp	+	–
tRNA-Pro	Transfer RNA	15,628	15,696	69 bp	−	–
D-loop	Control region	15,697	16,560	864 bp	–	37.0%