Sebastes alutus
Pacific ocean perch
GC content
44.69%
Whole genome
Non-coding
2,016 bp
Including the D-loop
Where Pacific ocean perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pacific ocean perch has the 33rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,617 bp
- GC skew (G − C) / (G + C)
- −0.234
- AT skew (A − T) / (A + T)
- +0.019
Life history
- Maximum lifespan
- 100 years
- Adult weight
- 770 g
- Female sexual maturity
- 8.7 years
- Male sexual maturity
- 10.5 years
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04503)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,617 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.280 | −0.140 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.42% | −0.395 | −0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.13% | −0.197 | −0.088 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.55% | −0.231 | +0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.415 | +0.093 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.57% | −0.403 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.37% | −0.253 | −0.064 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.286 | −0.260 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.259 | −0.195 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.295 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.02% | −0.314 | −0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.43% | −0.341 | +0.386 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.293 | −0.101 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.00% | −0.099 | +0.201 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.07% | −0.085 | +0.198 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU115
UUC115
Leu L17.5%
UUA110
UUG29
CUU169
CUC130
CUA172
CUG56
Ile I6.7%
AUU175
AUC79
Met M3.8%
AUA87
AUG58
Val V6.3%
GUU72
GUC54
GUA85
GUG28
Ser S6.4%
UCU45
UCC60
UCA63
UCG16
AGU15
AGC44
Pro P5.8%
CCU54
CCC98
CCA54
CCG14
Thr T7.8%
ACU49
ACC117
ACA112
ACG18
Ala A9.5%
GCU66
GCC164
GCA109
GCG23
Tyr Y2.9%
UAU57
UAC55
His H2.7%
CAU31
CAC73
Gln Q2.5%
CAA78
CAG18
Asn N2.9%
AAU55
AAC57
Lys K1.9%
AAA52
AAG22
Asp D2.1%
GAU29
GAC50
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA105
UGG14
Arg R2.1%
CGU8
CGC19
CGA42
CGG10
Gly G6.5%
GGU43
GGC89
GGA68
GGG47
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082757.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.4% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 42.6% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 43.6% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 49.4% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,386 | 15,526 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,527 | 15,598 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,598 | 15,667 | 70 bp | − | – |