Sebastes auriculatus
Brown rockfish
GC content
45.20%
Whole genome
Non-coding
1,443 bp
Including the D-loop
Where Brown rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Brown rockfish has the 932nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,043 bp
- GC skew (G − C) / (G + C)
- −0.254
- AT skew (A − T) / (A + T)
- +0.027
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,043 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,554 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.316 | −0.125 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.61% | −0.394 | −0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.84% | −0.196 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.261 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.463 | +0.140 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.423 | −0.029 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.62% | −0.268 | −0.055 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.85% | −0.365 | −0.176 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.301 | −0.182 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.49% | −0.312 | −0.053 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.64% | −0.350 | −0.004 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.393 | +0.403 | |||||
| CYTBCytochrome b | 1,141 bp | 45.66% | −0.313 | −0.077 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.11% | −0.114 | +0.208 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.90% | −0.099 | +0.214 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU112
UUC117
Leu L17.5%
UUA109
UUG29
CUU160
CUC137
CUA182
CUG49
Ile I6.9%
AUU169
AUC94
Met M3.8%
AUA88
AUG57
Val V6.1%
GUU63
GUC59
GUA81
GUG28
Ser S6.4%
UCU42
UCC60
UCA74
UCG7
AGU13
AGC46
Pro P5.8%
CCU45
CCC112
CCA50
CCG12
Thr T7.9%
ACU49
ACC123
ACA114
ACG14
Ala A9.5%
GCU71
GCC163
GCA112
GCG15
Tyr Y2.9%
UAU54
UAC58
His H2.7%
CAU31
CAC73
Gln Q2.5%
CAA74
CAG22
Asn N3.0%
AAU50
AAC63
Lys K1.9%
AAA53
AAG21
Asp D2.0%
GAU26
GAC52
Glu E2.5%
GAA75
GAG22
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA102
UGG17
Arg R2.1%
CGU8
CGC21
CGA40
CGG10
Gly G6.5%
GGU45
GGC85
GGA73
GGG43
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082772.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,902 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.6% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 47.9% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 46.5% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 44.6% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,386 | 15,526 | 1,141 bp | + | 45.7% |
| tRNA-Thr | Transfer RNA | 15,527 | 15,598 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,598 | 15,667 | 70 bp | − | – |