Sebastes emphaeus
Puget Sound rockfish
GC content
44.88%
Whole genome
Non-coding
1,740 bp
Including the D-loop
Where Puget Sound rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Puget Sound rockfish has the 1,360th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,341 bp
- GC skew (G − C) / (G + C)
- −0.243
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,341 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.49% | −0.300 | −0.129 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.23% | −0.385 | −0.022 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.13% | −0.194 | −0.086 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.11% | −0.258 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.422 | +0.106 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.411 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.241 | −0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.298 | −0.227 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.234 | −0.205 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.309 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.54% | −0.324 | −0.025 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.04% | −0.375 | +0.406 | |||||
| CYTBCytochrome b | 1,141 bp | 44.70% | −0.298 | −0.103 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.00% | −0.104 | +0.201 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.07% | −0.087 | +0.203 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU121
UUC110
Leu L17.5%
UUA108
UUG34
CUU160
CUC138
CUA177
CUG49
Ile I6.7%
AUU175
AUC81
Met M3.7%
AUA84
AUG58
Val V6.3%
GUU72
GUC52
GUA88
GUG27
Ser S6.3%
UCU45
UCC57
UCA69
UCG11
AGU15
AGC44
Pro P5.8%
CCU54
CCC101
CCA47
CCG18
Thr T7.8%
ACU47
ACC124
ACA110
ACG16
Ala A9.5%
GCU69
GCC160
GCA109
GCG25
Tyr Y2.9%
UAU54
UAC58
His H2.7%
CAU32
CAC72
Gln Q2.5%
CAA81
CAG15
Asn N2.9%
AAU52
AAC60
Lys K1.9%
AAA55
AAG19
Asp D2.1%
GAU28
GAC51
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA105
UGG14
Arg R2.1%
CGU7
CGC22
CGA38
CGG12
Gly G6.5%
GGU50
GGC81
GGA76
GGG40
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082816.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.5% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.2% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.1% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 44.7% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |