Sebastes helvomaculatus
Rosethorn rockfish
GC content
44.91%
Whole genome
Non-coding
1,460 bp
Including the D-loop
Where Rosethorn rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rosethorn rockfish has the 43rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,062 bp
- GC skew (G − C) / (G + C)
- −0.254
- AT skew (A − T) / (A + T)
- +0.028
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,062 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,556 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.49% | −0.317 | −0.133 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.56% | −0.433 | +0.023 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.52% | −0.187 | −0.093 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.250 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.450 | +0.114 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.03% | −0.403 | −0.037 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.75% | −0.259 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.333 | −0.193 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.314 | −0.159 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.49% | −0.340 | −0.037 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.94% | −0.356 | −0.001 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.402 | +0.410 | |||||
| CYTBCytochrome b | 1,141 bp | 44.44% | −0.310 | −0.082 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.00% | −0.108 | +0.201 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.13% | −0.093 | +0.208 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU114
UUC116
Leu L17.4%
UUA122
UUG24
CUU163
CUC133
CUA174
CUG48
Ile I6.8%
AUU164
AUC93
Met M3.9%
AUA99
AUG48
Val V6.1%
GUU73
GUC52
GUA85
GUG24
Ser S6.3%
UCU48
UCC55
UCA72
UCG7
AGU13
AGC44
Pro P5.8%
CCU46
CCC111
CCA52
CCG12
Thr T8.0%
ACU41
ACC131
ACA118
ACG13
Ala A9.5%
GCU64
GCC165
GCA111
GCG20
Tyr Y2.9%
UAU53
UAC59
His H2.7%
CAU31
CAC73
Gln Q2.5%
CAA75
CAG21
Asn N3.0%
AAU51
AAC62
Lys K1.9%
AAA53
AAG21
Asp D2.1%
GAU27
GAC52
Glu E2.5%
GAA76
GAG21
Cys C0.7%
UGU9
UGC17
Trp W3.1%
UGA104
UGG15
Arg R2.1%
CGU9
CGC20
CGA42
CGG8
Gly G6.5%
GGU46
GGC83
GGA77
GGG40
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082775.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.5% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,043 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,089 | 1,046 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,160 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,408 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,481 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,033 | 1,551 bp | + | 45.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,034 | 7,104 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,108 | 7,180 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 45.0% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 46.5% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 43.9% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,386 | 15,526 | 1,141 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,527 | 15,598 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,598 | 15,667 | 70 bp | − | – |