Sebastes jordani
Shortbelly rockfish
GC content
45.43%
Whole genome
Non-coding
1,194 bp
D-loop 1,119 bp
Where Shortbelly rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Shortbelly rockfish has the 421st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,788 bp
- GC skew (G − C) / (G + C)
- −0.253
- AT skew (A − T) / (A + T)
- +0.028
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,788 bp
Protein-coding11,407 bp
12S rRNA943 bp
16S rRNA1,694 bp
All tRNA1,551 bp
D-loop1,119 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.97% | −0.310 | −0.130 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.13% | −0.428 | +0.042 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.29% | −0.187 | −0.097 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.252 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.450 | +0.136 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.385 | −0.040 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.24% | −0.278 | −0.062 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.296 | −0.198 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.310 | −0.145 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.71% | −0.324 | −0.035 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.77% | −0.344 | −0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.402 | +0.402 | |||||
| CYTBCytochrome b | 1,141 bp | 45.84% | −0.335 | −0.074 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 50.37% | −0.120 | +0.218 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 46.69% | −0.085 | +0.209 | |||||
| D-loopControl region (D-loop) | 1,119 bp | 34.53% | −0.155 | +0.060 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU107
UUC122
Leu L17.5%
UUA114
UUG24
CUU161
CUC137
CUA186
CUG44
Ile I6.9%
AUU163
AUC98
Met M3.8%
AUA96
AUG50
Val V6.0%
GUU60
GUC61
GUA82
GUG24
Ser S6.3%
UCU46
UCC55
UCA64
UCG16
AGU14
AGC43
Pro P5.8%
CCU48
CCC101
CCA56
CCG17
Thr T8.0%
ACU51
ACC121
ACA119
ACG15
Ala A9.4%
GCU61
GCC169
GCA112
GCG16
Tyr Y2.9%
UAU60
UAC52
His H2.7%
CAU29
CAC75
Gln Q2.5%
CAA80
CAG16
Asn N3.0%
AAU54
AAC61
Lys K1.9%
AAA55
AAG19
Asp D2.1%
GAU27
GAC52
Glu E2.5%
GAA69
GAG28
Cys C0.7%
UGU9
UGC17
Trp W3.1%
UGA100
UGG19
Arg R2.1%
CGU11
CGC18
CGA41
CGG9
Gly G6.5%
GGU46
GGC82
GGA66
GGG52
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_085188.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,011 | 943 bp | + | 50.4% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,780 | 1,694 bp | + | 46.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 47.0% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,902 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,044 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,305 | 72 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,349 | 5,412 | 64 bp | + | – |
| tRNA-Tyr | Transfer RNA | 5,413 | 5,483 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,485 | 7,035 | 1,551 bp | + | 46.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,106 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,110 | 7,182 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,189 | 7,879 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,880 | 7,953 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,955 | 8,122 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,113 | 8,796 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,796 | 9,580 | 785 bp | + | 46.2% |
| tRNA-Gly | Transfer RNA | 9,581 | 9,652 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,653 | 10,001 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,002 | 10,070 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,071 | 10,367 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,361 | 11,741 | 1,381 bp | + | 46.7% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,878 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,883 | 11,955 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,956 | 13,794 | 1,839 bp | + | 43.8% |
| ND6 | Protein-coding gene | 13,791 | 14,312 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,313 | 14,381 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,388 | 15,528 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,529 | 15,600 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,600 | 15,669 | 70 bp | − | – |
| D-loop | Control region | 15,670 | 16,788 | 1,119 bp | – | 34.5% |