Sebastes melanostomus
Blackgill rockfish
GC content
45.10%
Whole genome
Non-coding
1,739 bp
Including the D-loop
Where Blackgill rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blackgill rockfish has the 41st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,346 bp
- GC skew (G − C) / (G + C)
- −0.250
- AT skew (A − T) / (A + T)
- +0.024
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,346 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,697 bp
All tRNA1,556 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.10% | −0.309 | −0.130 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.94% | −0.389 | −0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.65% | −0.203 | −0.087 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.241 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.439 | +0.116 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.03% | −0.416 | −0.032 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.263 | −0.061 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.302 | −0.222 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.278 | −0.190 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.326 | −0.055 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.97% | −0.330 | −0.016 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.370 | +0.410 | |||||
| CYTBCytochrome b | 1,141 bp | 45.05% | −0.311 | −0.088 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 49.74% | −0.117 | +0.206 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 46.02% | −0.086 | +0.199 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU114
UUC116
Leu L17.5%
UUA114
UUG32
CUU157
CUC141
CUA167
CUG57
Ile I6.8%
AUU164
AUC94
Met M3.8%
AUA91
AUG52
Val V6.2%
GUU69
GUC55
GUA80
GUG31
Ser S6.3%
UCU47
UCC55
UCA73
UCG8
AGU15
AGC43
Pro P5.8%
CCU50
CCC106
CCA52
CCG12
Thr T7.9%
ACU45
ACC129
ACA108
ACG19
Ala A9.5%
GCU65
GCC166
GCA110
GCG19
Tyr Y2.9%
UAU52
UAC60
His H2.7%
CAU31
CAC73
Gln Q2.5%
CAA78
CAG18
Asn N3.0%
AAU54
AAC59
Lys K1.9%
AAA55
AAG19
Asp D2.1%
GAU27
GAC52
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU7
UGC18
Trp W3.1%
UGA102
UGG17
Arg R2.1%
CGU10
CGC19
CGA43
CGG7
Gly G6.5%
GGU41
GGC89
GGA72
GGG44
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082790.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 49.7% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,784 | 1,697 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,858 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 48.1% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,047 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,093 | 1,046 bp | + | 46.9% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,412 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,485 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 45.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,112 | 7,184 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,191 | 7,881 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,882 | 7,955 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,957 | 8,124 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,115 | 8,798 | 684 bp | + | 45.0% |
| COX3 | Protein-coding gene | 8,798 | 9,582 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,583 | 9,655 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,656 | 10,004 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,005 | 10,073 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,074 | 10,370 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,364 | 11,744 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,745 | 11,813 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,814 | 11,881 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,958 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,797 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,794 | 14,315 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 14,316 | 14,384 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,391 | 15,531 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,532 | 15,603 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,672 | 70 bp | − | – |