Sebastes nigrocinctus

Tiger rockfish

Maximum lifespan

116 yr

AnAge record

mtDNA size

16,922 bp

RefSeq NC_039778.1

GC content

45.33%

Whole genome

Non-coding

1,328 bp

D-loop 1,254 bp

Where Tiger rockfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Tiger rockfish has the 17th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,922 bp

GC skew (G − C) / (G + C): −0.257
AT skew (A − T) / (A + T): +0.028

Life history

Maximum lifespan: 116 years
Adult weight: 1.2 kg

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04532)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,922 bp

Protein-coding11,407 bp

12S rRNA943 bp

16S rRNA1,693 bp

All tRNA1,552 bp

D-loop1,254 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Sebastes nigrocinctus genes

ND1NADH dehydrogenase subunit 1	975 bp	22.7%	29.4%	16.2%	31.7%	47.90%	−0.323	−0.130
ND2NADH dehydrogenase subunit 2	1,046 bp	26.9%	26.2%	13.7%	33.3%	46.94%	−0.418	+0.013
COX1Cytochrome c oxidase subunit I	1,551 bp	24.8%	29.8%	18.2%	27.1%	45.39%	−0.196	−0.091
COX2Cytochrome c oxidase subunit II	691 bp	28.7%	27.9%	16.2%	27.2%	43.42%	−0.253	+0.013
ATP8ATP synthase F0 subunit 8	168 bp	29.8%	23.8%	12.5%	33.9%	46.43%	−0.462	+0.111
ATP6ATP synthase F0 subunit 6	684 bp	26.5%	28.8%	13.3%	31.4%	44.74%	−0.405	−0.042
COX3Cytochrome c oxidase subunit III	785 bp	25.2%	28.0%	17.1%	29.7%	46.75%	−0.270	−0.053
ND3NADH dehydrogenase subunit 3	349 bp	20.6%	30.7%	16.6%	32.1%	48.71%	−0.318	−0.196
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	30.3%	16.2%	31.3%	47.48%	−0.319	−0.154
ND4NADH dehydrogenase subunit 4	1,381 bp	25.3%	27.6%	15.8%	31.3%	47.07%	−0.329	−0.042
ND5NADH dehydrogenase subunit 5	1,839 bp	27.8%	27.8%	14.3%	30.1%	44.37%	−0.355	+0.001
ND6NADH dehydrogenase subunit 6	522 bp	37.2%	15.9%	14.4%	32.6%	46.94%	−0.388	+0.401
CYTBCytochrome b	1,141 bp	25.4%	29.9%	15.3%	29.4%	44.70%	−0.314	−0.081
12S rRNA12S ribosomal RNA	943 bp	30.1%	19.7%	22.3%	27.9%	50.16%	−0.112	+0.209
16S rRNA16S ribosomal RNA	1,693 bp	32.6%	21.4%	20.9%	25.2%	46.01%	−0.094	+0.208
D-loopControl region (D-loop)	1,254 bp	34.7%	29.3%	13.6%	20.1%	34.53%	−0.191	+0.085

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU110

UUC119

Leu L17.5%

UUA117

UUG28

CUU162

CUC136

CUA176

CUG46

Ile I6.7%

AUU164

AUC92

Met M3.9%

AUA93

AUG55

Val V6.1%

GUU66

GUC58

GUA80

GUG28

Ser S6.3%

UCU47

UCC58

UCA70

UCG7

AGU12

AGC45

Pro P5.8%

CCU49

CCC108

CCA50

CCG14

Thr T8.0%

ACU45

ACC129

ACA117

ACG13

Ala A9.5%

GCU65

GCC166

GCA114

GCG16

Tyr Y2.9%

UAU50

UAC62

His H2.7%

CAU29

CAC75

Gln Q2.5%

CAA79

CAG17

Asn N3.0%

AAU50

AAC63

Lys K1.9%

AAA53

AAG21

Asp D2.1%

GAU27

GAC52

Glu E2.5%

GAA77

GAG20

Cys C0.7%

UGU7

UGC19

Trp W3.1%

UGA100

UGG19

Arg R2.1%

CGU9

CGC20

CGA43

CGG7

Gly G6.5%

GGU49

GGC81

GGA76

GGG40

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_039778.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Sebastes nigrocinctus (NC_039778.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,011	943 bp	+	50.2%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,087	2,779	1,693 bp	+	46.0%
tRNA-Leu (UUR)	Transfer RNA	2,780	2,853	74 bp	+	–
ND1	Protein-coding gene	2,854	3,828	975 bp	+	47.9%
tRNA-Ile	Transfer RNA	3,833	3,901	69 bp	+	–
tRNA-Gln	Transfer RNA	3,902	3,973	72 bp	−	–
tRNA-Met	Transfer RNA	3,973	4,043	71 bp	+	–
ND2	Protein-coding gene	4,044	5,089	1,046 bp	+	46.9%
tRNA-Trp	Transfer RNA	5,090	5,160	71 bp	+	–
tRNA-Ala	Transfer RNA	5,162	5,230	69 bp	−	–
tRNA-Asn	Transfer RNA	5,233	5,304	72 bp	−	–
tRNA-Cys	Transfer RNA	5,348	5,411	64 bp	+	–
tRNA-Tyr	Transfer RNA	5,412	5,482	71 bp	−	–
COX1	Protein-coding gene	5,484	7,034	1,551 bp	+	45.4%
tRNA-Ser (UCN)	Transfer RNA	7,034	7,105	72 bp	−	–
tRNA-Asp	Transfer RNA	7,109	7,181	73 bp	+	–
COX2	Protein-coding gene	7,188	7,878	691 bp	+	43.4%
tRNA-Lys	Transfer RNA	7,879	7,952	74 bp	+	–
ATP8	Protein-coding gene	7,954	8,121	168 bp	+	46.4%
ATP6	Protein-coding gene	8,112	8,795	684 bp	+	44.7%
COX3	Protein-coding gene	8,795	9,579	785 bp	+	46.8%
tRNA-Gly	Transfer RNA	9,580	9,651	72 bp	+	–
ND3	Protein-coding gene	9,652	10,000	349 bp	+	48.7%
tRNA-Arg	Transfer RNA	10,001	10,069	69 bp	+	–
ND4L	Protein-coding gene	10,070	10,366	297 bp	+	47.5%
ND4	Protein-coding gene	10,360	11,740	1,381 bp	+	47.1%
tRNA-His	Transfer RNA	11,741	11,809	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,810	11,877	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,882	11,954	73 bp	+	–
ND5	Protein-coding gene	11,955	13,793	1,839 bp	+	44.4%
ND6	Protein-coding gene	13,790	14,311	522 bp	−	46.9%
tRNA-Glu	Transfer RNA	14,312	14,380	69 bp	−	–
CYTB	Protein-coding gene	14,387	15,527	1,141 bp	+	44.7%
tRNA-Thr	Transfer RNA	15,528	15,599	72 bp	+	–
tRNA-Pro	Transfer RNA	15,599	15,668	70 bp	−	–
D-loop	Control region	15,669	16,922	1,254 bp	–	34.5%