Sebastes polyspinis
Northern rockfish
GC content
45.20%
Whole genome
Non-coding
1,362 bp
Including the D-loop
Where Northern rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Northern rockfish has the 108th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,964 bp
- GC skew (G − C) / (G + C)
- −0.240
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,964 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,694 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.306 | −0.136 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.13% | −0.387 | −0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.94% | −0.194 | −0.089 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.55% | −0.238 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.432 | +0.103 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.42% | −0.414 | −0.049 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.265 | −0.047 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.306 | −0.229 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.287 | −0.182 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.62% | −0.317 | −0.060 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.54% | −0.314 | −0.029 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.339 | +0.373 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.305 | −0.093 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.21% | −0.107 | +0.202 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 46.34% | −0.085 | +0.199 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU117
UUC115
Leu L17.5%
UUA115
UUG27
CUU162
CUC136
CUA176
CUG50
Ile I6.8%
AUU176
AUC83
Met M3.8%
AUA85
AUG58
Val V6.1%
GUU68
GUC52
GUA85
GUG29
Ser S6.3%
UCU44
UCC58
UCA68
UCG13
AGU14
AGC44
Pro P5.8%
CCU54
CCC98
CCA57
CCG11
Thr T7.8%
ACU45
ACC121
ACA116
ACG14
Ala A9.5%
GCU69
GCC163
GCA114
GCG17
Tyr Y2.9%
UAU58
UAC54
His H2.7%
CAU32
CAC72
Gln Q2.5%
CAA79
CAG17
Asn N3.0%
AAU57
AAC57
Lys K1.9%
AAA53
AAG21
Asp D2.0%
GAU31
GAC47
Glu E2.5%
GAA69
GAG28
Cys C0.7%
UGU6
UGC20
Trp W3.1%
UGA107
UGG12
Arg R2.1%
CGU9
CGC21
CGA38
CGG11
Gly G6.5%
GGU46
GGC86
GGA71
GGG44
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_083047.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.2% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,780 | 1,694 bp | + | 46.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,904 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,043 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,089 | 1,046 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,160 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 44.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.6% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 43.4% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 45.6% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |