Sebastes rosenblatti
Greenblotched rockfish
GC content
44.97%
Whole genome
Non-coding
1,458 bp
Including the D-loop
Where Greenblotched rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Greenblotched rockfish has the 147th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,061 bp
- GC skew (G − C) / (G + C)
- −0.257
- AT skew (A − T) / (A + T)
- +0.030
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,061 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,693 bp
All tRNA1,556 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.80% | −0.322 | −0.128 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.94% | −0.426 | +0.020 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.39% | −0.193 | −0.093 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.98% | −0.253 | +0.015 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.443 | +0.101 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.30% | −0.413 | −0.039 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.88% | −0.255 | −0.060 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.337 | −0.189 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.329 | −0.147 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.345 | −0.030 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.05% | −0.351 | −0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.388 | +0.401 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.320 | −0.076 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 49.95% | −0.108 | +0.198 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.25% | −0.093 | +0.209 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU114
UUC116
Leu L17.4%
UUA119
UUG20
CUU160
CUC136
CUA178
CUG51
Ile I6.8%
AUU162
AUC95
Met M3.9%
AUA97
AUG50
Val V6.1%
GUU72
GUC54
GUA83
GUG25
Ser S6.3%
UCU47
UCC56
UCA74
UCG5
AGU14
AGC43
Pro P5.8%
CCU47
CCC111
CCA51
CCG12
Thr T8.0%
ACU42
ACC131
ACA118
ACG13
Ala A9.5%
GCU64
GCC166
GCA109
GCG21
Tyr Y2.9%
UAU52
UAC60
His H2.7%
CAU31
CAC73
Gln Q2.5%
CAA76
CAG20
Asn N3.0%
AAU50
AAC63
Lys K1.9%
AAA56
AAG18
Asp D2.1%
GAU29
GAC50
Glu E2.5%
GAA77
GAG20
Cys C0.7%
UGU9
UGC17
Trp W3.1%
UGA101
UGG18
Arg R2.1%
CGU8
CGC21
CGA43
CGG7
Gly G6.4%
GGU47
GGC81
GGA78
GGG39
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
37 annotated features in NC_082792.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,780 | 1,693 bp | + | 46.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 47.8% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,904 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,044 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 46.9% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,409 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,482 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,484 | 7,034 | 1,551 bp | + | 45.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,181 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,188 | 7,878 | 691 bp | + | 43.0% |
| tRNA-Lys | Transfer RNA | 7,879 | 7,952 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,121 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,112 | 8,795 | 684 bp | + | 44.3% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 46.9% |
| tRNA-Gly | Transfer RNA | 9,580 | 9,651 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,652 | 10,000 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,001 | 10,069 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,360 | 11,740 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,877 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,882 | 11,954 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,793 | 1,839 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,790 | 14,311 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,312 | 14,380 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,527 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,528 | 15,599 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,599 | 15,668 | 70 bp | − | – |