Sebastes ruberrimus

Rasphead rockfish

Maximum lifespan

118 yr

AnAge record

mtDNA size

17,067 bp

RefSeq NC_085186.1

GC content

44.86%

Whole genome

Non-coding

1,474 bp

D-loop 1,401 bp

Where Rasphead rockfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Rasphead rockfish has the 16th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,067 bp

GC skew (G − C) / (G + C): −0.244
AT skew (A − T) / (A + T): +0.019

Life history

Maximum lifespan: 118 years
Adult weight: 9.8 kg
Female sexual maturity: 13.5 years
Male sexual maturity: 13.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04542)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,067 bp

Protein-coding11,407 bp

12S rRNA943 bp

16S rRNA1,693 bp

All tRNA1,551 bp

D-loop1,401 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Sebastes ruberrimus genes

ND1NADH dehydrogenase subunit 1	975 bp	23.3%	30.4%	15.9%	30.5%	46.36%	−0.314	−0.132
ND2NADH dehydrogenase subunit 2	1,046 bp	26.4%	27.1%	13.9%	32.7%	46.56%	−0.405	−0.013
COX1Cytochrome c oxidase subunit I	1,551 bp	24.9%	30.0%	18.2%	27.0%	45.13%	−0.194	−0.093
COX2Cytochrome c oxidase subunit II	691 bp	28.8%	28.5%	16.2%	26.5%	42.69%	−0.241	+0.005
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.2%	14.3%	34.5%	48.81%	−0.415	+0.093
ATP6ATP synthase F0 subunit 6	684 bp	26.6%	29.2%	13.0%	31.1%	44.15%	−0.411	−0.047
COX3Cytochrome c oxidase subunit III	785 bp	25.4%	29.3%	16.9%	28.4%	45.35%	−0.253	−0.072
ND3NADH dehydrogenase subunit 3	349 bp	20.9%	31.8%	16.0%	31.2%	47.28%	−0.321	−0.207
ND4LNADH dehydrogenase subunit 4L	297 bp	21.9%	30.0%	16.8%	31.3%	48.15%	−0.301	−0.156
ND4NADH dehydrogenase subunit 4	1,381 bp	25.7%	28.2%	15.6%	30.6%	46.13%	−0.325	−0.046
ND5NADH dehydrogenase subunit 5	1,839 bp	27.4%	28.5%	14.7%	29.4%	44.10%	−0.332	−0.021
ND6NADH dehydrogenase subunit 6	522 bp	35.4%	15.9%	15.9%	32.8%	48.66%	−0.346	+0.381
CYTBCytochrome b	1,141 bp	25.6%	30.1%	15.3%	29.0%	44.35%	−0.308	−0.080
12S rRNA12S ribosomal RNA	943 bp	29.9%	19.8%	22.4%	27.9%	50.27%	−0.110	+0.203
16S rRNA16S ribosomal RNA	1,693 bp	32.5%	21.3%	21.0%	25.2%	46.13%	−0.091	+0.208
D-loopControl region (D-loop)	1,401 bp	35.4%	31.1%	14.6%	18.9%	33.48%	−0.130	+0.064

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU113

UUC119

Leu L17.4%

UUA119

UUG25

CUU167

CUC127

CUA179

CUG46

Ile I6.8%

AUU177

AUC83

Met M3.8%

AUA85

AUG59

Val V6.1%

GUU69

GUC52

GUA88

GUG22

Ser S6.4%

UCU44

UCC57

UCA71

UCG11

AGU15

AGC44

Pro P5.8%

CCU55

CCC102

CCA50

CCG13

Thr T7.9%

ACU46

ACC125

ACA114

ACG14

Ala A9.6%

GCU70

GCC163

GCA112

GCG20

Tyr Y2.9%

UAU56

UAC56

His H2.7%

CAU33

CAC71

Gln Q2.5%

CAA81

CAG15

Asn N3.0%

AAU50

AAC64

Lys K1.9%

AAA55

AAG19

Asp D2.1%

GAU30

GAC49

Glu E2.5%

GAA72

GAG24

Cys C0.7%

UGU7

UGC19

Trp W3.1%

UGA104

UGG15

Arg R2.1%

CGU9

CGC20

CGA40

CGG10

Gly G6.4%

GGU52

GGC76

GGA76

GGG41

Stop 0.2%

UAA7

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_085186.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Sebastes ruberrimus (NC_085186.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,011	943 bp	+	50.3%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,087	2,779	1,693 bp	+	46.1%
tRNA-Leu (UUR)	Transfer RNA	2,780	2,853	74 bp	+	–
ND1	Protein-coding gene	2,854	3,828	975 bp	+	46.4%
tRNA-Ile	Transfer RNA	3,833	3,901	69 bp	+	–
tRNA-Gln	Transfer RNA	3,902	3,972	71 bp	−	–
tRNA-Met	Transfer RNA	3,972	4,042	71 bp	+	–
ND2	Protein-coding gene	4,043	5,088	1,046 bp	+	46.6%
tRNA-Trp	Transfer RNA	5,089	5,159	71 bp	+	–
tRNA-Ala	Transfer RNA	5,161	5,229	69 bp	−	–
tRNA-Asn	Transfer RNA	5,232	5,303	72 bp	−	–
tRNA-Cys	Transfer RNA	5,346	5,409	64 bp	+	–
tRNA-Tyr	Transfer RNA	5,410	5,480	71 bp	−	–
COX1	Protein-coding gene	5,482	7,032	1,551 bp	+	45.1%
tRNA-Ser (UCN)	Transfer RNA	7,032	7,103	72 bp	−	–
tRNA-Asp	Transfer RNA	7,107	7,179	73 bp	+	–
COX2	Protein-coding gene	7,186	7,876	691 bp	+	42.7%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	48.8%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	44.2%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	45.4%
tRNA-Gly	Transfer RNA	9,578	9,649	72 bp	+	–
ND3	Protein-coding gene	9,650	9,998	349 bp	+	47.3%
tRNA-Arg	Transfer RNA	9,999	10,067	69 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	48.2%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	46.1%
tRNA-His	Transfer RNA	11,739	11,807	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,808	11,875	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,880	11,952	73 bp	+	–
ND5	Protein-coding gene	11,953	13,791	1,839 bp	+	44.1%
ND6	Protein-coding gene	13,788	14,309	522 bp	−	48.7%
tRNA-Glu	Transfer RNA	14,310	14,378	69 bp	−	–
CYTB	Protein-coding gene	14,385	15,525	1,141 bp	+	44.4%
tRNA-Thr	Transfer RNA	15,526	15,597	72 bp	+	–
tRNA-Pro	Transfer RNA	15,597	15,666	70 bp	−	–
D-loop	Control region	15,667	17,067	1,401 bp	–	33.5%