Sebastes saxicola
Stripetail rockfish
GC content
45.18%
Whole genome
Non-coding
1,436 bp
Including the D-loop
Where Stripetail rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Stripetail rockfish has the 288th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,036 bp
- GC skew (G − C) / (G + C)
- −0.251
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,036 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,554 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.297 | −0.148 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.04% | −0.398 | −0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.91% | −0.194 | −0.099 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.27% | −0.244 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.450 | +0.114 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.74% | −0.405 | −0.037 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.258 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.345 | −0.196 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.291 | −0.192 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.309 | −0.068 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.54% | −0.346 | −0.014 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.385 | +0.388 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.301 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.11% | −0.114 | +0.208 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.13% | −0.093 | +0.215 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU117
UUC113
Leu L17.6%
UUA108
UUG32
CUU161
CUC143
CUA172
CUG53
Ile I6.9%
AUU167
AUC97
Met M3.8%
AUA87
AUG57
Val V6.0%
GUU67
GUC53
GUA82
GUG27
Ser S6.3%
UCU43
UCC58
UCA75
UCG7
AGU15
AGC43
Pro P5.7%
CCU54
CCC101
CCA50
CCG13
Thr T7.8%
ACU46
ACC123
ACA115
ACG12
Ala A9.6%
GCU73
GCC162
GCA107
GCG22
Tyr Y2.9%
UAU55
UAC57
His H2.8%
CAU31
CAC74
Gln Q2.5%
CAA76
CAG20
Asn N3.0%
AAU56
AAC57
Lys K1.9%
AAA54
AAG20
Asp D2.0%
GAU28
GAC50
Glu E2.5%
GAA72
GAG25
Cys C0.7%
UGU9
UGC17
Trp W3.1%
UGA106
UGG13
Arg R2.1%
CGU9
CGC21
CGA38
CGG11
Gly G6.5%
GGU45
GGC86
GGA67
GGG48
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082759.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,902 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.0% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,406 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 45.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,949 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,109 | 8,792 | 684 bp | + | 44.7% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,524 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,596 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,665 | 70 bp | − | – |