Sebastes variabilis
Light dusky rockfish
GC content
45.48%
Whole genome
Non-coding
800 bp
D-loop 736 bp
Where Light dusky rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Light dusky rockfish has the 150th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,401 bp
- GC skew (G − C) / (G + C)
- −0.239
- AT skew (A − T) / (A + T)
- +0.013
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,401 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,555 bp
D-loop736 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.302 | −0.136 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.32% | −0.394 | −0.005 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.87% | −0.201 | −0.083 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.40% | −0.235 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.432 | +0.103 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.78% | −0.411 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.265 | −0.047 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.302 | −0.233 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.296 | −0.174 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.55% | −0.320 | −0.059 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.86% | −0.312 | −0.032 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.341 | +0.378 | |||||
| CYTBCytochrome b | 1,141 bp | 44.96% | −0.306 | −0.089 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.11% | −0.110 | +0.203 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.37% | −0.083 | +0.198 | |||||
| D-loopControl region (D-loop) | 736 bp | 33.06% | −0.021 | +0.049 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU119
UUC112
Leu L17.5%
UUA114
UUG26
CUU162
CUC138
CUA177
CUG50
Ile I6.8%
AUU173
AUC84
Met M3.8%
AUA86
AUG57
Val V6.2%
GUU68
GUC53
GUA86
GUG29
Ser S6.4%
UCU44
UCC58
UCA69
UCG12
AGU14
AGC45
Pro P5.8%
CCU52
CCC99
CCA55
CCG14
Thr T7.8%
ACU47
ACC120
ACA118
ACG12
Ala A9.5%
GCU67
GCC164
GCA114
GCG17
Tyr Y2.9%
UAU58
UAC54
His H2.7%
CAU32
CAC72
Gln Q2.5%
CAA80
CAG16
Asn N3.0%
AAU56
AAC57
Lys K1.9%
AAA52
AAG22
Asp D2.0%
GAU31
GAC47
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA106
UGG13
Arg R2.1%
CGU9
CGC22
CGA39
CGG9
Gly G6.5%
GGU46
GGC85
GGA73
GGG43
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_060711.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,406 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 44.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,949 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 43.8% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 45.6% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,524 | 1,141 bp | + | 45.0% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,596 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,665 | 70 bp | − | – |
| D-loop | Control region | 15,666 | 16,401 | 736 bp | – | 33.1% |