Sebastes variegatus
Harlequin rockfish
GC content
44.99%
Whole genome
Non-coding
1,739 bp
Including the D-loop
Where Harlequin rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Harlequin rockfish has the 181st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,340 bp
- GC skew (G − C) / (G + C)
- −0.243
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,340 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.80% | −0.305 | −0.132 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.32% | −0.382 | −0.024 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.07% | −0.187 | −0.094 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.40% | −0.249 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.415 | +0.093 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.47% | −0.408 | −0.046 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.241 | −0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.298 | −0.227 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.239 | −0.200 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.49% | −0.312 | −0.064 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.75% | −0.329 | −0.024 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.377 | +0.411 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.309 | −0.093 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.11% | −0.101 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.13% | −0.088 | +0.204 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU120
UUC111
Leu L17.5%
UUA110
UUG32
CUU160
CUC140
CUA172
CUG53
Ile I6.7%
AUU173
AUC83
Met M3.7%
AUA83
AUG59
Val V6.3%
GUU71
GUC54
GUA85
GUG28
Ser S6.3%
UCU45
UCC57
UCA69
UCG11
AGU14
AGC45
Pro P5.8%
CCU53
CCC103
CCA47
CCG17
Thr T7.8%
ACU47
ACC124
ACA110
ACG16
Ala A9.5%
GCU68
GCC161
GCA108
GCG26
Tyr Y2.9%
UAU54
UAC58
His H2.7%
CAU32
CAC72
Gln Q2.5%
CAA79
CAG17
Asn N2.9%
AAU51
AAC61
Lys K1.9%
AAA54
AAG20
Asp D2.1%
GAU29
GAC50
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA106
UGG13
Arg R2.1%
CGU7
CGC23
CGA39
CGG10
Gly G6.5%
GGU50
GGC80
GGA76
GGG41
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082788.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.8% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 45.5% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 46.5% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 44.8% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |