Sebastes wilsoni
Pygmy rockfish
GC content
45.09%
Whole genome
Non-coding
1,460 bp
Including the D-loop
Where Pygmy rockfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pygmy rockfish has the 695th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,061 bp
- GC skew (G − C) / (G + C)
- −0.241
- AT skew (A − T) / (A + T)
- +0.017
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,061 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,693 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.59% | −0.297 | −0.131 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.42% | −0.375 | −0.033 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.94% | −0.191 | −0.089 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.253 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.422 | +0.106 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.03% | −0.409 | −0.043 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.24% | −0.234 | −0.071 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.302 | −0.222 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.220 | −0.218 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.27% | −0.315 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.64% | −0.335 | −0.020 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.377 | +0.411 | |||||
| CYTBCytochrome b | 1,141 bp | 44.87% | −0.297 | −0.103 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 49.89% | −0.102 | +0.203 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.01% | −0.089 | +0.204 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU121
UUC110
Leu L17.5%
UUA109
UUG34
CUU160
CUC137
CUA175
CUG51
Ile I6.7%
AUU173
AUC82
Met M3.7%
AUA84
AUG58
Val V6.3%
GUU71
GUC54
GUA87
GUG27
Ser S6.4%
UCU45
UCC58
UCA70
UCG10
AGU14
AGC45
Pro P5.8%
CCU51
CCC104
CCA47
CCG17
Thr T7.8%
ACU47
ACC125
ACA109
ACG17
Ala A9.5%
GCU72
GCC159
GCA107
GCG25
Tyr Y2.9%
UAU56
UAC56
His H2.7%
CAU35
CAC69
Gln Q2.5%
CAA80
CAG16
Asn N2.9%
AAU52
AAC60
Lys K1.9%
AAA54
AAG20
Asp D2.1%
GAU29
GAC50
Glu E2.5%
GAA67
GAG30
Cys C0.7%
UGU7
UGC19
Trp W3.1%
UGA105
UGG14
Arg R2.1%
CGU7
CGC23
CGA38
CGG11
Gly G6.5%
GGU49
GGC81
GGA77
GGG40
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082762.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 49.9% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,779 | 1,693 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 47.6% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,903 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,042 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 47.4% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 44.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 45.0% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 46.2% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 44.6% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |