Seepiophila jonesi
Seepiophila jonesi
GC content
35.17%
Whole genome
Non-coding
452 bp
Including the D-loop
Where Seepiophila jonesi sits among 2,335 species
Whole-genome GC content against maximum lifespan. Seepiophila jonesi has the 3rd longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,092 bp
- GC skew (G − C) / (G + C)
- −0.286
- AT skew (A − T) / (A + T)
- −0.061
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,092 bp
Protein-coding11,080 bp
12S rRNA832 bp
16S rRNA1,309 bp
All tRNA1,426 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 927 bp | 35.17% | −0.374 | −0.108 | |||||
| ND2NADH dehydrogenase subunit 2 | 994 bp | 34.71% | −0.426 | −0.069 | |||||
| COX1Cytochrome c oxidase subunit I | 1,555 bp | 38.26% | −0.143 | −0.144 | |||||
| COX2Cytochrome c oxidase subunit II | 687 bp | 38.43% | −0.235 | +0.026 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 32.70% | −0.615 | −0.159 | |||||
| ATP6ATP synthase F0 subunit 6 | 687 bp | 36.54% | −0.442 | −0.174 | |||||
| COX3Cytochrome c oxidase subunit III | 780 bp | 38.72% | −0.106 | −0.100 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 36.75% | −0.349 | −0.144 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 36.77% | −0.439 | −0.076 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,344 bp | 34.15% | −0.442 | −0.085 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,699 bp | 34.31% | −0.403 | −0.095 | |||||
| ND6NADH dehydrogenase subunit 6 | 472 bp | 28.60% | −0.526 | −0.169 | |||||
| CYTBCytochrome b | 1,141 bp | 37.16% | −0.292 | −0.144 | |||||
| 12S rRNA12S ribosomal RNA | 832 bp | 37.14% | −0.139 | +0.140 | |||||
| 16S rRNA16S ribosomal RNA | 1,309 bp | 33.23% | −0.200 | +0.112 |
Codon usage
Counts per codon, darker is more frequent3,694 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F7.9%
UUU180
UUC111
Leu L17.0%
UUA185
UUG12
CUU153
CUC98
CUA166
CUG13
Ile I9.3%
AUU230
AUC114
Met M6.2%
AUA203
AUG26
Val V3.8%
GUU46
GUC13
GUA78
GUG5
Ser S10.6%
UCU112
UCC87
UCA98
UCG5
AGU10
AGC14
AGA56
AGG9
Pro P5.2%
CCU85
CCC38
CCA64
CCG6
Thr T6.3%
ACU83
ACC71
ACA75
ACG3
Ala A6.4%
GCU84
GCC79
GCA68
GCG6
Tyr Y2.6%
UAU55
UAC41
His H2.4%
CAU65
CAC22
Gln Q2.1%
CAA73
CAG6
Asn N3.5%
AAU86
AAC45
Lys K2.2%
AAA79
AAG4
Asp D1.8%
GAU31
GAC36
Glu E1.9%
GAA68
GAG4
Cys C1.0%
UGU15
UGC21
Trp W2.7%
UGA85
UGG13
Arg R1.7%
CGU12
CGC13
CGA37
CGG0
Gly G5.1%
GGU27
GGC26
GGA102
GGG34
Stop 0.2%
UAA7
UAG1
Genome map
37 annotated features in NC_026861.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (35.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-His | Transfer RNA | 311 | 372 | 62 bp | + | – |
| ND5 | Protein-coding gene | 373 | 2,071 | 1,699 bp | + | 34.3% |
| tRNA-Phe | Transfer RNA | 2,072 | 2,137 | 66 bp | + | – |
| tRNA-Glu | Transfer RNA | 2,145 | 2,211 | 67 bp | + | – |
| tRNA-Pro | Transfer RNA | 2,244 | 2,308 | 65 bp | + | – |
| tRNA-Thr | Transfer RNA | 2,311 | 2,376 | 66 bp | + | – |
| ND4L | Protein-coding gene | 2,377 | 2,667 | 291 bp | + | 36.8% |
| ND4 | Protein-coding gene | 2,661 | 4,004 | 1,344 bp | + | 34.2% |
| tRNA-Cys | Transfer RNA | 4,003 | 4,064 | 62 bp | + | – |
| tRNA-Met | Transfer RNA | 4,065 | 4,128 | 64 bp | + | – |
| 12S rRNA | Ribosomal RNA | 4,130 | 4,961 | 832 bp | + | 37.1% |
| tRNA-Val | Transfer RNA | 4,963 | 5,029 | 67 bp | + | – |
| 16S rRNA | Ribosomal RNA | 5,030 | 6,338 | 1,309 bp | + | 33.2% |
| tRNA-Leu (CUN) | Transfer RNA | 6,339 | 6,403 | 65 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,407 | 6,468 | 62 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 6,470 | 6,537 | 68 bp | + | – |
| tRNA-Leu (UUR) | Transfer RNA | 6,538 | 6,600 | 63 bp | + | – |
| ND1 | Protein-coding gene | 6,602 | 7,528 | 927 bp | + | 35.2% |
| tRNA-Ile | Transfer RNA | 7,528 | 7,596 | 69 bp | + | – |
| tRNA-Lys | Transfer RNA | 7,606 | 7,667 | 62 bp | + | – |
| ND3 | Protein-coding gene | 7,668 | 8,018 | 351 bp | + | 36.8% |
| tRNA-Ser (AGY) | Transfer RNA | 8,021 | 8,086 | 66 bp | + | – |
| ND2 | Protein-coding gene | 8,088 | 9,081 | 994 bp | + | 34.7% |
| COX1 | Protein-coding gene | 9,082 | 10,636 | 1,555 bp | + | 38.3% |
| tRNA-Asn | Transfer RNA | 10,637 | 10,698 | 62 bp | + | – |
| COX2 | Protein-coding gene | 10,699 | 11,385 | 687 bp | + | 38.4% |
| tRNA-Asp | Transfer RNA | 11,384 | 11,448 | 65 bp | + | – |
| ATP8 | Protein-coding gene | 11,450 | 11,608 | 159 bp | + | 32.7% |
| tRNA-Tyr | Transfer RNA | 11,607 | 11,669 | 63 bp | + | – |
| tRNA-Gly | Transfer RNA | 11,670 | 11,733 | 64 bp | + | – |
| COX3 | Protein-coding gene | 11,734 | 12,513 | 780 bp | + | 38.7% |
| tRNA-Gln | Transfer RNA | 12,517 | 12,585 | 69 bp | + | – |
| ND6 | Protein-coding gene | 12,587 | 13,058 | 472 bp | + | 28.6% |
| CYTB | Protein-coding gene | 13,059 | 14,199 | 1,141 bp | + | 37.2% |
| tRNA-Trp | Transfer RNA | 14,200 | 14,262 | 63 bp | + | – |
| ATP6 | Protein-coding gene | 14,263 | 14,949 | 687 bp | + | 36.5% |
| tRNA-Arg | Transfer RNA | 14,953 | 15,018 | 66 bp | + | – |