Seriolella porosa
Silver warehou
GC content
45.42%
Whole genome
Non-coding
1,122 bp
D-loop 1,049 bp
Where Silver warehou sits among 2,335 species
Whole-genome GC content against maximum lifespan. Silver warehou has the 1,208th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,814 bp
- GC skew (G − C) / (G + C)
- −0.294
- AT skew (A − T) / (A + T)
- +0.090
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,814 bp
Protein-coding11,410 bp
12S rRNA953 bp
16S rRNA1,780 bp
All tRNA1,559 bp
D-loop1,049 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.64% | −0.389 | +0.064 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.75% | −0.479 | +0.198 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 45.41% | −0.202 | −0.056 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.280 | +0.050 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.500 | +0.167 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.76% | −0.438 | −0.003 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 47.96% | −0.300 | −0.007 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.338 | −0.087 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.320 | +0.014 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.82% | −0.373 | +0.076 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.57% | −0.411 | +0.063 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 45.09% | −0.564 | +0.481 | |||||
| CYTBCytochrome b | 1,141 bp | 46.10% | −0.376 | +0.024 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 49.63% | −0.091 | +0.192 | |||||
| 16S rRNA16S ribosomal RNA | 1,780 bp | 45.96% | −0.115 | +0.272 | |||||
| D-loopControl region (D-loop) | 1,049 bp | 36.42% | −0.215 | +0.005 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU95
UUC145
Leu L16.8%
UUA81
UUG25
CUU104
CUC136
CUA259
CUG34
Ile I7.5%
AUU134
AUC151
Met M4.1%
AUA106
AUG51
Val V5.7%
GUU59
GUC47
GUA83
GUG27
Ser S5.9%
UCU27
UCC63
UCA75
UCG9
AGU9
AGC42
Pro P5.7%
CCU41
CCC89
CCA84
CCG5
Thr T8.1%
ACU32
ACC129
ACA140
ACG6
Ala A9.2%
GCU55
GCC165
GCA114
GCG18
Tyr Y3.0%
UAU35
UAC78
His H2.8%
CAU32
CAC73
Gln Q2.6%
CAA88
CAG11
Asn N3.0%
AAU32
AAC81
Lys K2.0%
AAA73
AAG5
Asp D2.1%
GAU11
GAC68
Glu E2.7%
GAA85
GAG18
Cys C0.7%
UGU6
UGC20
Trp W3.2%
UGA104
UGG18
Arg R2.0%
CGU7
CGC11
CGA55
CGG3
Gly G6.5%
GGU27
GGC79
GGA102
GGG39
Stop 0.2%
UAA7
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_025665.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,021 | 953 bp | + | 49.6% |
| tRNA-Val | Transfer RNA | 1,022 | 1,093 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,873 | 1,780 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,874 | 2,948 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,949 | 3,923 | 975 bp | + | 45.6% |
| tRNA-Ile | Transfer RNA | 3,933 | 4,004 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,003 | 4,073 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,073 | 4,141 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,142 | 5,186 | 1,045 bp | + | 47.8% |
| tRNA-Trp | Transfer RNA | 5,187 | 5,259 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,262 | 5,330 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,332 | 5,404 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,437 | 5,503 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,506 | 5,576 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,578 | 7,134 | 1,557 bp | + | 45.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,126 | 7,196 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,202 | 7,274 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,289 | 7,979 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,980 | 8,053 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,055 | 8,222 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,213 | 8,896 | 684 bp | + | 45.8% |
| COX3 | Protein-coding gene | 8,896 | 9,681 | 786 bp | + | 48.0% |
| tRNA-Gly | Transfer RNA | 9,681 | 9,753 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,754 | 10,102 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 10,103 | 10,172 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,173 | 10,469 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,463 | 11,843 | 1,381 bp | + | 44.8% |
| tRNA-His | Transfer RNA | 11,844 | 11,912 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,913 | 11,981 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,983 | 12,055 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,056 | 13,894 | 1,839 bp | + | 45.6% |
| ND6 | Protein-coding gene | 13,891 | 14,409 | 519 bp | − | 45.1% |
| tRNA-Glu | Transfer RNA | 14,410 | 14,478 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,484 | 15,624 | 1,141 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,625 | 15,696 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,695 | 15,765 | 71 bp | − | – |
| D-loop | Control region | 15,766 | 16,814 | 1,049 bp | – | 36.4% |