MitoAge

Sigmodon hispidus

Hispid cotton rat

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Maximum lifespan
5.2 yr
AnAge record
mtDNA size
16,394 bp
RefSeq NC_035572.1
GC content
40.55%
Whole genome
Non-coding
1,109 bp
Including the D-loop

Where Hispid cotton rat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Hispid cotton rat has the 1,976th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Hispid cotton rat
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,394 bp
GC skew (G − C) / (G + C)
−0.332
AT skew (A − T) / (A + T)
−0.009

Life history

Maximum lifespan
5.2 years
Adult weight
185 g
Birth weight
6.2 g
Basal metabolic rate
1.085 W
Body temperature
38.1 °C
Female sexual maturity
40 days
Male sexual maturity
40 days
Gestation or incubation
27 days
Litter or clutch size
5
Litters per year
6.7
Postnatal growth rate
0.0362 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02931)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,394 bp
Protein-coding11,344 bp
12S rRNA952 bp
16S rRNA1,501 bp
All tRNA1,494 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp25.2%32.6%11.8%30.4%42.22%−0.441−0.128
ND2NADH dehydrogenase subunit 21,037 bp27.7%31.1%8.4%32.8%41.18%−0.593−0.059
COX1Cytochrome c oxidase subunit I1,545 bp25.8%30.4%17.3%26.6%43.88%−0.212−0.082
COX2Cytochrome c oxidase subunit II684 bp30.8%29.7%15.1%24.4%39.47%−0.237+0.019
ATP8ATP synthase F0 subunit 8204 bp33.8%30.9%8.8%26.5%35.29%−0.500+0.045
ATP6ATP synthase F0 subunit 6681 bp29.4%32.5%10.3%27.9%38.18%−0.462−0.050
COX3Cytochrome c oxidase subunit III784 bp26.0%29.2%14.9%29.8%44.77%−0.333−0.058
ND3NADH dehydrogenase subunit 3348 bp26.1%31.0%11.8%31.0%42.82%−0.450−0.085
ND4LNADH dehydrogenase subunit 4L297 bp25.3%36.0%11.8%26.9%38.72%−0.391−0.176
ND4NADH dehydrogenase subunit 41,378 bp29.0%31.4%9.9%29.6%39.55%−0.497−0.040
ND5NADH dehydrogenase subunit 51,812 bp28.0%32.3%10.8%28.9%39.68%−0.455−0.070
ND6NADH dehydrogenase subunit 6528 bp36.2%23.9%10.2%29.7%39.96%−0.488+0.205
CYTBCytochrome b1,144 bp26.2%30.2%13.4%30.2%43.62%−0.387−0.070
12S rRNA12S ribosomal RNA952 bp36.2%24.1%17.6%22.1%39.71%−0.111+0.202
16S rRNA16S ribosomal RNA1,501 bp33.4%26.4%18.7%21.5%40.17%−0.068+0.118

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.5%
UUU111
UUC136
Leu L15.7%
UUA95
UUG16
CUU159
CUC152
CUA147
CUG26
Ile I10.1%
AUU230
AUC152
Met M5.4%
AUA163
AUG42
Val V4.4%
GUU61
GUC42
GUA49
GUG17
Ser S8.2%
UCU76
UCC96
UCA84
UCG6
AGU14
AGC35
Pro P5.3%
CCU59
CCC91
CCA45
CCG7
Thr T7.5%
ACU78
ACC91
ACA105
ACG11
Ala A6.5%
GCU64
GCC113
GCA60
GCG11
Tyr Y3.2%
UAU60
UAC63
His H2.7%
CAU30
CAC71
Gln Q2.0%
CAA63
CAG13
Asn N4.3%
AAU73
AAC92
Lys K2.7%
AAA91
AAG11
Asp D1.8%
GAU32
GAC38
Glu E2.5%
GAA71
GAG23
Cys C0.9%
UGU9
UGC25
Trp W2.7%
UGA97
UGG6
Arg R1.7%
CGU11
CGC15
CGA33
CGG5
Gly G5.6%
GGU31
GGC70
GGA71
GGG41
Stop 0.2%
UAA7
UAG2
AGA0
AGG0

Genome map

37 annotated features in NC_035572.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA19926567 bp+–
12S rRNARibosomal RNA2681,219952 bp+39.7%
tRNA-ValTransfer RNA1,2201,28667 bp+–
16S rRNARibosomal RNA1,3302,8301,501 bp+40.2%
tRNA-Leu (UUR)Transfer RNA2,8462,92075 bp+–
ND1Protein-coding gene2,9213,877957 bp+42.2%
tRNA-IleTransfer RNA3,8753,94571 bp+–
tRNA-GlnTransfer RNA3,9424,01170 bp−–
tRNA-MetTransfer RNA4,0164,08469 bp+–
ND2Protein-coding gene4,0855,1211,037 bp+41.2%
tRNA-TrpTransfer RNA5,1225,18665 bp+–
tRNA-AlaTransfer RNA5,1895,25769 bp−–
tRNA-AsnTransfer RNA5,2615,33171 bp−–
tRNA-CysTransfer RNA5,3635,42967 bp−–
tRNA-TyrTransfer RNA5,4305,49667 bp−–
COX1Protein-coding gene5,4987,0421,545 bp+43.9%
tRNA-Ser (UCN)Transfer RNA7,0407,10869 bp−–
tRNA-AspTransfer RNA7,1127,18069 bp+–
COX2Protein-coding gene7,1827,865684 bp+39.5%
tRNA-LysTransfer RNA7,8687,93366 bp+–
ATP8Protein-coding gene7,9358,138204 bp+35.3%
ATP6Protein-coding gene8,0968,776681 bp+38.2%
COX3Protein-coding gene8,7769,559784 bp+44.8%
tRNA-GlyTransfer RNA9,5609,62768 bp+–
ND3Protein-coding gene9,6289,975348 bp+42.8%
tRNA-ArgTransfer RNA9,97610,04469 bp+–
ND4LProtein-coding gene10,04610,342297 bp+38.7%
ND4Protein-coding gene10,33611,7131,378 bp+39.6%
tRNA-HisTransfer RNA11,71411,78168 bp+–
tRNA-Ser (AGY)Transfer RNA11,78211,83958 bp+–
tRNA-Leu (CUN)Transfer RNA11,84011,90970 bp+–
ND5Protein-coding gene11,91013,7211,812 bp+39.7%
ND6Protein-coding gene13,71814,245528 bp−40.0%
tRNA-GluTransfer RNA14,24614,31469 bp−–
CYTBProtein-coding gene14,32015,4631,144 bp+43.6%
tRNA-ThrTransfer RNA15,46415,53067 bp+–
tRNA-ProTransfer RNA15,53115,59767 bp−–

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