Sillago sihama
Northern whiting
GC content
47.66%
Whole genome
Non-coding
966 bp
D-loop 910 bp
Where Northern whiting sits among 2,335 species
Whole-genome GC content against maximum lifespan. Northern whiting has the 1,816th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,599 bp
- GC skew (G − C) / (G + C)
- −0.242
- AT skew (A − T) / (A + T)
- +0.003
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,599 bp
Protein-coding11,412 bp
12S rRNA958 bp
16S rRNA1,718 bp
All tRNA1,560 bp
D-loop910 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.49% | −0.343 | −0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 52.49% | −0.362 | −0.074 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.91% | −0.195 | −0.089 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.17% | −0.216 | −0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | −0.109 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.93% | −0.296 | −0.146 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 49.11% | −0.301 | −0.075 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.267 | −0.266 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.307 | −0.181 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,383 bp | 47.58% | −0.316 | −0.034 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.20% | −0.343 | −0.028 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.47% | −0.352 | +0.405 | |||||
| CYTBCytochrome b | 1,143 bp | 47.07% | −0.331 | −0.088 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.84% | −0.068 | +0.185 | |||||
| 16S rRNA16S ribosomal RNA | 1,718 bp | 48.49% | −0.076 | +0.166 | |||||
| D-loopControl region (D-loop) | 910 bp | 39.12% | −0.185 | +0.083 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU87
UUC152
Leu L17.1%
UUA83
UUG29
CUU154
CUC170
CUA126
CUG88
Ile I6.7%
AUU138
AUC119
Met M4.0%
AUA69
AUG82
Val V6.6%
GUU62
GUC92
GUA63
GUG34
Ser S6.6%
UCU43
UCC73
UCA59
UCG25
AGU12
AGC40
Pro P6.0%
CCU66
CCC92
CCA52
CCG18
Thr T7.4%
ACU65
ACC116
ACA76
ACG24
Ala A9.3%
GCU79
GCC153
GCA106
GCG17
Tyr Y2.8%
UAU38
UAC69
His H2.7%
CAU25
CAC77
Gln Q2.6%
CAA78
CAG22
Asn N2.9%
AAU36
AAC76
Lys K2.1%
AAA59
AAG20
Asp D2.0%
GAU22
GAC53
Glu E2.7%
GAA74
GAG29
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA95
UGG25
Arg R2.0%
CGU9
CGC18
CGA40
CGG9
Gly G6.2%
GGU34
GGC78
GGA80
GGG44
Stop 0.3%
UAA9
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_016672.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,026 | 958 bp | + | 50.8% |
| tRNA-Val | Transfer RNA | 1,023 | 1,095 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,813 | 1,718 bp | + | 48.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,803 | 2,878 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,879 | 3,853 | 975 bp | + | 47.5% |
| tRNA-Ile | Transfer RNA | 3,857 | 3,927 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,927 | 3,997 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,997 | 4,065 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,066 | 5,111 | 1,046 bp | + | 52.5% |
| tRNA-Trp | Transfer RNA | 5,112 | 5,183 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,184 | 5,252 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,254 | 5,326 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,361 | 5,432 | 72 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,433 | 5,502 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,504 | 7,054 | 1,551 bp | + | 47.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,055 | 7,125 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,131 | 7,202 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,210 | 7,900 | 691 bp | + | 46.2% |
| tRNA-Lys | Transfer RNA | 7,901 | 7,975 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,976 | 8,143 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,134 | 8,817 | 684 bp | + | 46.9% |
| COX3 | Protein-coding gene | 8,817 | 9,602 | 786 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 9,603 | 9,672 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,673 | 10,021 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 10,022 | 10,090 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,091 | 10,387 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,381 | 11,763 | 1,383 bp | + | 47.6% |
| tRNA-His | Transfer RNA | 11,764 | 11,832 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,833 | 11,900 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,905 | 11,977 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,978 | 13,816 | 1,839 bp | + | 47.2% |
| ND6 | Protein-coding gene | 13,813 | 14,334 | 522 bp | − | 48.5% |
| tRNA-Glu | Transfer RNA | 14,336 | 14,404 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,405 | 15,547 | 1,143 bp | + | 47.1% |
| tRNA-Thr | Transfer RNA | 15,548 | 15,619 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,619 | 15,689 | 71 bp | − | – |
| D-loop | Control region | 15,690 | 16,599 | 910 bp | – | 39.1% |