Silurus glanis

Sheatfish

Maximum lifespan

60 yr

AnAge record

mtDNA size

16,526 bp

RefSeq NC_014261.1

GC content

44.98%

Whole genome

Non-coding

952 bp

D-loop 887 bp

Where Sheatfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sheatfish has the 90th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,526 bp

GC skew (G − C) / (G + C): −0.282
AT skew (A − T) / (A + T): +0.096

Life history

Maximum lifespan: 60 years
Adult weight: 168.3 kg
Female sexual maturity: 3.5 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04587)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,526 bp

Protein-coding11,387 bp

12S rRNA954 bp

16S rRNA1,679 bp

All tRNA1,554 bp

D-loop887 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Silurus glanis genes

ND1NADH dehydrogenase subunit 1	975 bp	27.9%	26.6%	15.3%	30.3%	45.54%	−0.329	+0.024
ND2NADH dehydrogenase subunit 2	1,045 bp	31.4%	22.3%	12.2%	34.1%	46.32%	−0.471	+0.169
COX1Cytochrome c oxidase subunit I	1,551 bp	26.7%	26.9%	18.4%	28.0%	46.42%	−0.206	−0.004
COX2Cytochrome c oxidase subunit II	691 bp	27.9%	26.5%	16.6%	28.9%	45.59%	−0.270	+0.027
ATP8ATP synthase F0 subunit 8	168 bp	34.5%	26.2%	11.9%	27.4%	39.29%	−0.394	+0.137
ATP6ATP synthase F0 subunit 6	684 bp	29.2%	27.6%	13.2%	30.0%	43.13%	−0.390	+0.028
COX3Cytochrome c oxidase subunit III	784 bp	26.3%	25.3%	17.6%	30.9%	48.47%	−0.274	+0.020
ND3NADH dehydrogenase subunit 3	349 bp	25.2%	26.9%	15.8%	32.1%	47.85%	−0.341	−0.033
ND4LNADH dehydrogenase subunit 4L	297 bp	23.9%	27.6%	16.5%	32.0%	48.49%	−0.319	−0.072
ND4NADH dehydrogenase subunit 4	1,381 bp	28.2%	27.2%	14.9%	29.6%	44.53%	−0.330	+0.018
ND5NADH dehydrogenase subunit 5	1,827 bp	30.9%	25.9%	13.1%	30.1%	43.19%	−0.394	+0.089
ND6NADH dehydrogenase subunit 6	519 bp	39.9%	12.9%	10.0%	37.2%	47.21%	−0.576	+0.511
CYTBCytochrome b	1,138 bp	27.6%	27.0%	14.2%	31.2%	45.43%	−0.373	+0.011
12S rRNA12S ribosomal RNA	954 bp	31.3%	21.4%	21.3%	26.0%	47.28%	−0.100	+0.189
16S rRNA16S ribosomal RNA	1,679 bp	35.7%	20.0%	19.4%	24.9%	44.31%	−0.124	+0.281
D-loopControl region (D-loop)	887 bp	31.9%	28.7%	16.6%	22.8%	39.35%	−0.158	+0.052

Codon usage

Counts per codon, darker is more frequent

Gene

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%

UUU90

UUC130

Leu L16.8%

UUA116

UUG27

CUU80

CUC109

CUA252

CUG55

Ile I7.4%

AUU160

AUC121

Met M4.6%

AUA112

AUG62

Val V6.0%

GUU49

GUC58

GUA91

GUG29

Ser S6.0%

UCU29

UCC77

UCA70

UCG5

AGU9

AGC38

Pro P5.7%

CCU28

CCC97

CCA80

CCG10

Thr T8.1%

ACU45

ACC112

ACA137

ACG12

Ala A8.9%

GCU52

GCC154

GCA116

GCG15

Tyr Y2.9%

UAU38

UAC73

His H2.9%

CAU27

CAC84

Gln Q2.7%

CAA85

CAG16

Asn N3.2%

AAU39

AAC84

Lys K2.1%

AAA75

AAG6

Asp D2.0%

GAU20

GAC57

Glu E2.6%

GAA82

GAG18

Cys C0.8%

UGU10

UGC22

Trp W3.1%

UGA95

UGG22

Arg R1.9%

CGU10

CGC14

CGA39

CGG10

Gly G6.3%

GGU18

GGC86

GGA87

GGG50

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_014261.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Silurus glanis (NC_014261.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,024	954 bp	+	47.3%
tRNA-Val	Transfer RNA	1,025	1,096	72 bp	+	–
16S rRNA	Ribosomal RNA	1,097	2,775	1,679 bp	+	44.3%
tRNA-Leu (UUR)	Transfer RNA	2,776	2,850	75 bp	+	–
ND1	Protein-coding gene	2,851	3,825	975 bp	+	45.5%
tRNA-Ile	Transfer RNA	3,827	3,898	72 bp	+	–
tRNA-Gln	Transfer RNA	3,898	3,968	71 bp	−	–
tRNA-Met	Transfer RNA	3,968	4,036	69 bp	+	–
ND2	Protein-coding gene	4,037	5,081	1,045 bp	+	46.3%
tRNA-Trp	Transfer RNA	5,082	5,152	71 bp	+	–
tRNA-Ala	Transfer RNA	5,155	5,223	69 bp	−	–
tRNA-Asn	Transfer RNA	5,225	5,297	73 bp	−	–
tRNA-Cys	Transfer RNA	5,332	5,397	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,401	5,470	70 bp	−	–
COX1	Protein-coding gene	5,472	7,022	1,551 bp	+	46.4%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,098	7,169	72 bp	+	–
COX2	Protein-coding gene	7,184	7,874	691 bp	+	45.6%
tRNA-Lys	Transfer RNA	7,875	7,948	74 bp	+	–
ATP8	Protein-coding gene	7,950	8,117	168 bp	+	39.3%
ATP6	Protein-coding gene	8,108	8,791	684 bp	+	43.1%
COX3	Protein-coding gene	8,791	9,574	784 bp	+	48.5%
tRNA-Gly	Transfer RNA	9,575	9,647	73 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	47.9%
tRNA-Arg	Transfer RNA	9,997	10,067	71 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	48.5%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	44.5%
tRNA-His	Transfer RNA	11,739	11,808	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,809	11,874	66 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,777	1,827 bp	+	43.2%
ND6	Protein-coding gene	13,774	14,292	519 bp	−	47.2%
tRNA-Glu	Transfer RNA	14,293	14,361	69 bp	−	–
CYTB	Protein-coding gene	14,363	15,500	1,138 bp	+	45.4%
tRNA-Thr	Transfer RNA	15,501	15,571	71 bp	+	–
tRNA-Pro	Transfer RNA	15,570	15,639	70 bp	+	–
D-loop	Control region	15,640	16,526	887 bp	–	39.4%