Siniperca chuatsi
Mandarin fish
GC content
45.39%
Whole genome
Non-coding
896 bp
D-loop 834 bp
Where Mandarin fish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mandarin fish has the 1,671st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,496 bp
- GC skew (G − C) / (G + C)
- −0.285
- AT skew (A − T) / (A + T)
- +0.048
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,496 bp
Protein-coding11,420 bp
12S rRNA946 bp
16S rRNA1,692 bp
All tRNA1,554 bp
D-loop834 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.388 | −0.016 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 47.24% | −0.496 | +0.036 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 46.47% | −0.225 | −0.061 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.276 | +0.061 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.83% | −0.481 | +0.077 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.443 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.75% | −0.302 | −0.038 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.338 | −0.179 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.389 | −0.111 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.98% | −0.367 | 0.000 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.67% | −0.380 | +0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.419 | +0.416 | |||||
| CYTBCytochrome b | 1,141 bp | 45.57% | −0.354 | −0.040 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 48.31% | −0.077 | +0.202 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 45.75% | −0.096 | +0.218 | |||||
| D-loopControl region (D-loop) | 834 bp | 35.61% | −0.158 | +0.050 |
Codon usage
Counts per codon, darker is more frequent3,812 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU98
UUC135
Leu L17.3%
UUA94
UUG16
CUU152
CUC140
CUA209
CUG47
Ile I7.2%
AUU151
AUC124
Met M4.0%
AUA96
AUG56
Val V5.7%
GUU70
GUC54
GUA68
GUG26
Ser S6.6%
UCU48
UCC72
UCA66
UCG4
AGU11
AGC49
Pro P5.9%
CCU59
CCC96
CCA60
CCG10
Thr T7.8%
ACU47
ACC128
ACA112
ACG11
Ala A8.9%
GCU64
GCC154
GCA109
GCG11
Tyr Y2.9%
UAU37
UAC75
His H2.8%
CAU31
CAC77
Gln Q2.6%
CAA90
CAG10
Asn N3.2%
AAU37
AAC84
Lys K1.9%
AAA69
AAG4
Asp D1.9%
GAU15
GAC59
Glu E2.7%
GAA86
GAG16
Cys C0.6%
UGU9
UGC15
Trp W3.2%
UGA104
UGG17
Arg R2.0%
CGU8
CGC14
CGA45
CGG10
Gly G6.4%
GGU40
GGC81
GGA93
GGG31
Stop 0.2%
UAA5
UAG1
AGA0
AGG2
Genome map
38 annotated features in NC_015822.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,778 | 1,692 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,902 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,091 | 1,050 bp | + | 47.2% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,477 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,038 | 1,560 bp | + | 46.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,175 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,184 | 7,874 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,875 | 7,948 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,950 | 8,117 | 168 bp | + | 45.8% |
| ATP6 | Protein-coding gene | 8,108 | 8,791 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,791 | 9,575 | 785 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,647 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,065 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,066 | 10,362 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,356 | 11,736 | 1,381 bp | + | 46.0% |
| tRNA-His | Transfer RNA | 11,737 | 11,805 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,806 | 11,875 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,950 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,951 | 13,789 | 1,839 bp | + | 43.7% |
| ND6 | Protein-coding gene | 13,786 | 14,307 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,308 | 14,376 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,381 | 15,521 | 1,141 bp | + | 45.6% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,593 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,662 | 70 bp | − | – |
| D-loop | Control region | 15,663 | 16,496 | 834 bp | – | 35.6% |