MitoAge

Spalacopus cyanus

Coruro

Add to compare Download FASTA
Maximum lifespan
10.8 yr
AnAge record
mtDNA size
16,830 bp
RefSeq NC_020660.1
GC content
36.95%
Whole genome
Non-coding
1,451 bp
D-loop 1,335 bp

Where Coruro sits among 2,335 species

Whole-genome GC content against maximum lifespan. Coruro has the 1,533rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Coruro
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,830 bp
GC skew (G − C) / (G + C)
−0.333
AT skew (A − T) / (A + T)
+0.095

Life history

Maximum lifespan
10.8 years
Adult weight
98 g
Birth weight
8.9 g
Basal metabolic rate
0.561 W
Body temperature
36.5 °C
Gestation or incubation
80 days
Litter or clutch size
2.4
Litters per year
1.8

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03108)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,830 bp
Protein-coding11,359 bp
12S rRNA954 bp
16S rRNA1,571 bp
All tRNA1,504 bp
D-loop1,335 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1958 bp32.7%29.4%10.3%27.6%37.89%−0.455+0.052
ND2NADH dehydrogenase subunit 21,042 bp37.0%29.2%7.2%26.6%33.78%−0.574+0.119
COX1Cytochrome c oxidase subunit I1,554 bp30.2%31.1%16.2%22.6%38.74%−0.166−0.015
COX2Cytochrome c oxidase subunit II684 bp34.9%30.6%12.6%21.9%34.50%−0.271+0.067
ATP8ATP synthase F0 subunit 8207 bp43.5%28.5%4.3%23.7%28.02%−0.690+0.208
ATP6ATP synthase F0 subunit 6681 bp30.7%32.2%10.7%26.4%37.15%−0.423−0.023
COX3Cytochrome c oxidase subunit III784 bp30.2%30.5%14.2%25.1%39.29%−0.279−0.004
ND3NADH dehydrogenase subunit 3346 bp30.9%32.4%11.0%25.7%36.71%−0.402−0.023
ND4LNADH dehydrogenase subunit 4L297 bp28.6%36.0%12.5%22.9%35.35%−0.295−0.115
ND4NADH dehydrogenase subunit 41,378 bp34.0%30.2%9.1%26.6%35.78%−0.489+0.060
ND5NADH dehydrogenase subunit 51,812 bp33.1%30.5%10.0%26.4%36.42%−0.452+0.040
ND6NADH dehydrogenase subunit 6534 bp43.6%20.4%7.1%28.8%35.96%−0.604+0.363
CYTBCytochrome b1,140 bp31.5%27.3%12.6%28.6%41.23%−0.387+0.072
12S rRNA12S ribosomal RNA954 bp38.8%23.4%16.1%21.7%37.84%−0.147+0.248
16S rRNA16S ribosomal RNA1,571 bp38.6%26.0%16.1%19.2%35.33%−0.088+0.195
D-loopControl region (D-loop)1,335 bp36.3%24.9%12.6%26.3%38.88%−0.353+0.186

Codon usage

Counts per codon, darker is more frequent

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU95
UUC133
Leu L15.6%
UUA185
UUG18
CUU86
CUC60
CUA228
CUG18
Ile I9.3%
AUU206
AUC149
Met M6.4%
AUA212
AUG31
Val V4.2%
GUU38
GUC28
GUA79
GUG13
Ser S7.9%
UCU71
UCC58
UCA114
UCG5
AGU17
AGC34
Pro P5.1%
CCU69
CCC55
CCA64
CCG6
Thr T8.7%
ACU68
ACC75
ACA177
ACG11
Ala A5.8%
GCU73
GCC61
GCA83
GCG4
Tyr Y3.7%
UAU60
UAC82
His H2.6%
CAU36
CAC62
Gln Q2.4%
CAA85
CAG6
Asn N4.6%
AAU79
AAC96
Lys K2.5%
AAA90
AAG6
Asp D1.7%
GAU24
GAC42
Glu E2.5%
GAA84
GAG10
Cys C0.8%
UGU18
UGC12
Trp W2.8%
UGA97
UGG10
Arg R1.7%
CGU6
CGC9
CGA47
CGG2
Gly G5.5%
GGU33
GGC46
GGA99
GGG31
Stop 0.2%
UAA5
UAG1
AGA1
AGG1

Genome map

38 annotated features in NC_020660.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA711,024954 bp+37.8%
tRNA-ValTransfer RNA1,0251,09268 bp+–
16S rRNARibosomal RNA1,0932,6631,571 bp+35.3%
tRNA-Leu (UUR)Transfer RNA2,6642,73875 bp+–
ND1Protein-coding gene2,7423,699958 bp+37.9%
tRNA-IleTransfer RNA3,7003,76768 bp+–
tRNA-GlnTransfer RNA3,7653,83571 bp−–
tRNA-MetTransfer RNA3,8383,90669 bp+–
ND2Protein-coding gene3,9074,9481,042 bp+33.8%
tRNA-TrpTransfer RNA4,9495,01769 bp+–
tRNA-AlaTransfer RNA5,0195,08870 bp−–
tRNA-AsnTransfer RNA5,0905,16273 bp−–
tRNA-CysTransfer RNA5,1985,26467 bp−–
tRNA-TyrTransfer RNA5,2665,33368 bp−–
COX1Protein-coding gene5,3416,8941,554 bp+38.7%
tRNA-Ser (UCN)Transfer RNA6,8866,95469 bp−–
tRNA-AspTransfer RNA6,9647,03269 bp+–
COX2Protein-coding gene7,0347,717684 bp+34.5%
tRNA-LysTransfer RNA7,7207,78566 bp+–
ATP8Protein-coding gene7,7877,993207 bp+28.0%
ATP6Protein-coding gene7,9488,628681 bp+37.2%
COX3Protein-coding gene8,6289,411784 bp+39.3%
tRNA-GlyTransfer RNA9,4129,48069 bp+–
ND3Protein-coding gene9,4819,826346 bp+36.7%
tRNA-ArgTransfer RNA9,8289,89467 bp+–
ND4LProtein-coding gene9,89610,192297 bp+35.4%
ND4Protein-coding gene10,18611,5631,378 bp+35.8%
tRNA-HisTransfer RNA11,56411,63370 bp+–
tRNA-Ser (AGY)Transfer RNA11,64911,70658 bp+–
tRNA-Leu (CUN)Transfer RNA11,70811,77770 bp+–
ND5Protein-coding gene11,77813,5891,812 bp+36.4%
ND6Protein-coding gene13,58614,119534 bp−36.0%
tRNA-GluTransfer RNA14,12014,18869 bp−–
CYTBProtein-coding gene14,19515,3341,140 bp+41.2%
tRNA-ThrTransfer RNA15,33515,40167 bp+–
tRNA-ProTransfer RNA15,40815,47366 bp−–
D-loopControl region15,47416,8081,335 bp–38.9%

Downloads