MitoAge

Sparus aurata

Gilthead seabream

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,652 bp
RefSeq NC_024236.1
GC content
45.97%
Whole genome
Non-coding
1,047 bp
D-loop 983 bp

Where Gilthead seabream sits among 2,335 species

Whole-genome GC content against maximum lifespan. Gilthead seabream has the 1,490th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Gilthead seabream
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,652 bp
GC skew (G − C) / (G + C)
−0.255
AT skew (A − T) / (A + T)
−0.009

Life history

Maximum lifespan
11 years
Adult weight
9.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04394)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,652 bp
Protein-coding11,421 bp
12S rRNA949 bp
16S rRNA1,696 bp
All tRNA1,552 bp
D-loop983 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp21.5%31.3%15.9%31.3%47.18%−0.326−0.184
ND2NADH dehydrogenase subunit 21,046 bp23.2%27.2%14.0%35.6%49.52%−0.436−0.080
COX1Cytochrome c oxidase subunit I1,566 bp24.5%30.7%18.3%26.5%44.83%−0.182−0.111
COX2Cytochrome c oxidase subunit II691 bp27.4%29.4%17.4%25.9%43.27%−0.197−0.036
ATP8ATP synthase F0 subunit 8165 bp26.1%27.3%13.3%33.3%46.67%−0.429−0.023
ATP6ATP synthase F0 subunit 6684 bp23.7%30.6%13.6%32.2%45.76%−0.406−0.127
COX3Cytochrome c oxidase subunit III785 bp24.5%28.2%17.2%30.2%47.39%−0.274−0.070
ND3NADH dehydrogenase subunit 3349 bp20.3%32.7%14.9%32.1%46.99%−0.366−0.232
ND4LNADH dehydrogenase subunit 4L297 bp21.2%30.3%15.5%33.0%48.49%−0.361−0.176
ND4NADH dehydrogenase subunit 41,381 bp23.6%28.2%16.5%31.6%48.15%−0.314−0.089
ND5NADH dehydrogenase subunit 51,842 bp27.0%27.5%14.4%31.1%45.44%−0.367−0.009
ND6NADH dehydrogenase subunit 6522 bp36.2%18.4%15.9%29.5%45.40%−0.300+0.326
CYTBCytochrome b1,141 bp23.7%30.1%16.1%30.1%46.19%−0.302−0.121
12S rRNA12S ribosomal RNA949 bp30.0%21.4%23.0%25.6%48.58%−0.054+0.168
16S rRNA16S ribosomal RNA1,696 bp32.8%21.0%20.9%25.2%46.17%−0.093+0.218
D-loopControl region (D-loop)983 bp32.6%30.8%14.8%21.9%36.62%−0.194+0.027

Codon usage

Counts per codon, darker is more frequent

3,812 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU118
UUC120
Leu L17.7%
UUA80
UUG32
CUU167
CUC196
CUA143
CUG55
Ile I6.9%
AUU154
AUC110
Met M3.8%
AUA80
AUG65
Val V6.2%
GUU90
GUC68
GUA60
GUG17
Ser S6.8%
UCU63
UCC75
UCA54
UCG14
AGU10
AGC44
Pro P5.5%
CCU56
CCC81
CCA60
CCG14
Thr T7.4%
ACU59
ACC113
ACA99
ACG10
Ala A9.1%
GCU65
GCC165
GCA100
GCG15
Tyr Y2.8%
UAU48
UAC60
His H2.9%
CAU40
CAC70
Gln Q2.5%
CAA75
CAG21
Asn N3.1%
AAU45
AAC72
Lys K2.0%
AAA57
AAG21
Asp D1.9%
GAU27
GAC46
Glu E2.7%
GAA76
GAG26
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA97
UGG22
Arg R2.0%
CGU16
CGC12
CGA44
CGG4
Gly G6.5%
GGU38
GGC83
GGA85
GGG42
Stop 0.2%
UAA5
UAG1
AGA0
AGG1

Genome map

38 annotated features in NC_024236.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,017949 bp+48.6%
tRNA-ValTransfer RNA1,0181,08972 bp+–
16S rRNARibosomal RNA1,0902,7851,696 bp+46.2%
tRNA-Leu (UUR)Transfer RNA2,7862,85873 bp+–
ND1Protein-coding gene2,8593,833975 bp+47.2%
tRNA-IleTransfer RNA3,8383,90770 bp+–
tRNA-GlnTransfer RNA3,9073,97771 bp−–
tRNA-MetTransfer RNA3,9774,04670 bp+–
ND2Protein-coding gene4,0475,0921,046 bp+49.5%
tRNA-TrpTransfer RNA5,0935,16270 bp+–
tRNA-AlaTransfer RNA5,1635,23169 bp−–
tRNA-AsnTransfer RNA5,2335,30573 bp−–
tRNA-CysTransfer RNA5,3415,40666 bp−–
tRNA-TyrTransfer RNA5,4075,47670 bp−–
COX1Protein-coding gene5,4787,0431,566 bp+44.8%
tRNA-Ser (UCN)Transfer RNA7,0317,10171 bp−–
tRNA-AspTransfer RNA7,1057,17773 bp+–
COX2Protein-coding gene7,1867,876691 bp+43.3%
tRNA-LysTransfer RNA7,8777,95074 bp+–
ATP8Protein-coding gene7,9528,116165 bp+46.7%
ATP6Protein-coding gene8,1108,793684 bp+45.8%
COX3Protein-coding gene8,7939,577785 bp+47.4%
tRNA-GlyTransfer RNA9,5789,64972 bp+–
ND3Protein-coding gene9,6509,998349 bp+47.0%
tRNA-ArgTransfer RNA9,99910,06971 bp+–
ND4LProtein-coding gene10,07110,367297 bp+48.5%
ND4Protein-coding gene10,36111,7411,381 bp+48.2%
tRNA-HisTransfer RNA11,74211,81069 bp+–
tRNA-Ser (AGY)Transfer RNA11,81111,87868 bp+–
tRNA-Leu (CUN)Transfer RNA11,88511,95773 bp+–
ND5Protein-coding gene11,95813,7991,842 bp+45.4%
ND6Protein-coding gene13,79214,313522 bp−45.4%
tRNA-GluTransfer RNA14,31414,38269 bp−–
CYTBProtein-coding gene14,38715,5271,141 bp+46.2%
tRNA-ThrTransfer RNA15,52815,59972 bp+–
tRNA-ProTransfer RNA15,59915,66971 bp−–
D-loopControl region15,67016,652983 bp–36.6%

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