Stenobrachius leucopsarus
Northern lampfish
GC content
47.11%
Whole genome
Non-coding
2,748 bp
D-loop 2,145 bp
Where Northern lampfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Northern lampfish has the 1,744th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome18,334 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.024
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,334 bp
Protein-coding11,408 bp
12S rRNA951 bp
16S rRNA1,673 bp
All tRNA1,554 bp
D-loop2,145 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.46% | −0.289 | −0.106 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.00% | −0.441 | +0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.91% | −0.227 | −0.094 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.89% | −0.296 | +0.046 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.493 | +0.054 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.54% | −0.373 | −0.097 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.96% | −0.305 | −0.060 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.72% | −0.367 | −0.140 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.20% | −0.342 | −0.094 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.57% | −0.318 | −0.055 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 47.17% | −0.344 | −0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.378 | +0.439 | |||||
| CYTBCytochrome b | 1,141 bp | 46.80% | −0.296 | −0.091 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 51.31% | −0.115 | +0.231 | |||||
| 16S rRNA16S ribosomal RNA | 1,673 bp | 47.94% | −0.125 | +0.247 | |||||
| D-loopControl region (D-loop) | 2,145 bp | 36.59% | −0.290 | −0.042 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU66
UUC167
Leu L17.0%
UUA68
UUG15
CUU155
CUC183
CUA156
CUG69
Ile I6.7%
AUU147
AUC107
Met M4.2%
AUA71
AUG89
Val V6.3%
GUU61
GUC80
GUA73
GUG27
Ser S6.4%
UCU38
UCC76
UCA64
UCG14
AGU8
AGC42
Pro P5.8%
CCU67
CCC76
CCA64
CCG14
Thr T7.6%
ACU58
ACC117
ACA98
ACG18
Ala A9.3%
GCU71
GCC145
GCA123
GCG16
Tyr Y2.8%
UAU45
UAC63
His H2.9%
CAU18
CAC93
Gln Q2.6%
CAA67
CAG31
Asn N3.1%
AAU41
AAC77
Lys K1.9%
AAA52
AAG20
Asp D2.0%
GAU13
GAC62
Glu E2.7%
GAA71
GAG30
Cys C0.8%
UGU10
UGC20
Trp W3.2%
UGA102
UGG20
Arg R2.0%
CGU7
CGC20
CGA42
CGG6
Gly G6.5%
GGU40
GGC108
GGA53
GGG45
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_068843.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,019 | 951 bp | + | 51.3% |
| tRNA-Val | Transfer RNA | 1,020 | 1,090 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,763 | 1,673 bp | + | 47.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,764 | 2,837 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,908 | 3,882 | 975 bp | + | 50.5% |
| tRNA-Ile | Transfer RNA | 3,884 | 3,955 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,955 | 4,025 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,025 | 4,093 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,094 | 5,138 | 1,045 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,139 | 5,209 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,211 | 5,279 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,281 | 5,353 | 73 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,445 | 5,515 | 71 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,522 | 5,587 | 66 bp | − | – |
| COX1 | Protein-coding gene | 5,601 | 7,151 | 1,551 bp | + | 47.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,152 | 7,222 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,226 | 7,294 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,306 | 7,996 | 691 bp | + | 46.9% |
| tRNA-Lys | Transfer RNA | 7,997 | 8,070 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,072 | 8,239 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,230 | 8,913 | 684 bp | + | 48.5% |
| COX3 | Protein-coding gene | 8,938 | 9,722 | 785 bp | + | 51.0% |
| tRNA-Gly | Transfer RNA | 9,723 | 9,794 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,795 | 10,143 | 349 bp | + | 50.7% |
| tRNA-Arg | Transfer RNA | 10,144 | 10,212 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,213 | 10,509 | 297 bp | + | 53.2% |
| ND4 | Protein-coding gene | 10,503 | 11,883 | 1,381 bp | + | 47.6% |
| tRNA-His | Transfer RNA | 11,884 | 11,952 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,953 | 12,021 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,039 | 12,110 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,111 | 13,946 | 1,836 bp | + | 47.2% |
| ND6 | Protein-coding gene | 13,947 | 14,468 | 522 bp | − | 48.1% |
| CYTB | Protein-coding gene | 14,542 | 15,682 | 1,141 bp | + | 46.8% |
| tRNA-Thr | Transfer RNA | 15,683 | 15,755 | 73 bp | + | – |
| tRNA-Glu | Transfer RNA | 15,976 | 16,044 | 69 bp | − | – |
| tRNA-Pro | Transfer RNA | 16,116 | 16,189 | 74 bp | − | – |
| D-loop | Control region | 16,190 | 18,334 | 2,145 bp | – | 36.6% |