MitoAge

Stenodus leucichthys

Inconnu

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Maximum lifespan
22 yr
AnAge record
mtDNA size
16,864 bp
RefSeq NC_020761.1
GC content
47.20%
Whole genome
Non-coding
1,272 bp
D-loop 1,204 bp

Where Inconnu sits among 2,335 species

Whole-genome GC content against maximum lifespan. Inconnu has the 787th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Inconnu
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,864 bp
GC skew (G − C) / (G + C)
−0.242
AT skew (A − T) / (A + T)
+0.022

Life history

Maximum lifespan
22 years
Adult weight
22 kg
Female sexual maturity
11 years
Male sexual maturity
10 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04478)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,864 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop1,204 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp23.4%28.3%17.6%30.7%48.31%−0.270−0.095
ND2NADH dehydrogenase subunit 21,050 bp26.7%25.7%14.6%33.0%47.62%−0.388+0.018
COX1Cytochrome c oxidase subunit I1,551 bp23.0%30.0%19.6%27.4%47.00%−0.166−0.134
COX2Cytochrome c oxidase subunit II691 bp26.9%28.1%16.9%28.1%45.01%−0.248−0.021
ATP8ATP synthase F0 subunit 8168 bp27.4%23.8%14.3%34.5%48.81%−0.415+0.070
ATP6ATP synthase F0 subunit 6684 bp25.1%27.2%14.5%33.2%47.66%−0.393−0.039
COX3Cytochrome c oxidase subunit III785 bp23.8%27.9%17.5%30.8%48.28%−0.277−0.079
ND3NADH dehydrogenase subunit 3349 bp21.5%30.7%17.5%30.4%47.85%−0.269−0.176
ND4LNADH dehydrogenase subunit 4L297 bp22.9%25.3%18.2%33.7%51.85%−0.299−0.049
ND4NADH dehydrogenase subunit 41,381 bp26.6%26.9%15.4%31.1%46.49%−0.340−0.004
ND5NADH dehydrogenase subunit 51,839 bp26.5%26.3%15.7%31.5%47.20%−0.334+0.003
ND6NADH dehydrogenase subunit 6522 bp37.0%12.5%14.8%35.8%50.58%−0.417+0.496
CYTBCytochrome b1,141 bp24.1%28.0%16.7%31.2%47.94%−0.302−0.074
12S rRNA12S ribosomal RNA947 bp29.3%20.5%23.1%27.1%50.26%−0.080+0.176
16S rRNA16S ribosomal RNA1,679 bp31.7%19.4%23.3%25.6%48.96%−0.046+0.242
D-loopControl region (D-loop)1,204 bp30.6%30.8%14.4%24.2%38.54%−0.254−0.003

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU107
UUC117
Leu L17.0%
UUA77
UUG33
CUU170
CUC130
CUA170
CUG69
Ile I6.7%
AUU132
AUC125
Met M4.2%
AUA97
AUG62
Val V6.4%
GUU70
GUC70
GUA66
GUG39
Ser S6.2%
UCU48
UCC65
UCA60
UCG10
AGU6
AGC48
Pro P5.6%
CCU34
CCC113
CCA52
CCG13
Thr T8.1%
ACU54
ACC131
ACA103
ACG21
Ala A9.2%
GCU60
GCC178
GCA97
GCG14
Tyr Y2.9%
UAU40
UAC70
His H2.8%
CAU17
CAC88
Gln Q2.6%
CAA78
CAG22
Asn N3.0%
AAU38
AAC75
Lys K2.0%
AAA49
AAG26
Asp D2.1%
GAU34
GAC45
Glu E2.7%
GAA69
GAG34
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA91
UGG32
Arg R2.0%
CGU8
CGC10
CGA42
CGG16
Gly G6.5%
GGU45
GGC76
GGA74
GGG54
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_020761.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,015947 bp+50.3%
tRNA-ValTransfer RNA1,0161,08772 bp+–
16S rRNARibosomal RNA1,0882,7661,679 bp+49.0%
tRNA-Leu (UUR)Transfer RNA2,7672,84175 bp+–
ND1Protein-coding gene2,8423,816975 bp+48.3%
tRNA-IleTransfer RNA3,8243,89572 bp+–
tRNA-GlnTransfer RNA3,8933,96371 bp−–
tRNA-MetTransfer RNA3,9634,03169 bp+–
ND2Protein-coding gene4,0325,0811,050 bp+47.6%
tRNA-TrpTransfer RNA5,0835,15472 bp+–
tRNA-AlaTransfer RNA5,1565,22469 bp−–
tRNA-AsnTransfer RNA5,2265,29873 bp−–
tRNA-CysTransfer RNA5,3335,40068 bp−–
tRNA-TyrTransfer RNA5,4015,47070 bp−–
COX1Protein-coding gene5,4727,0221,551 bp+47.0%
tRNA-Ser (UCN)Transfer RNA7,0237,09371 bp−–
tRNA-AspTransfer RNA7,0987,17174 bp+–
COX2Protein-coding gene7,1867,876691 bp+45.0%
tRNA-LysTransfer RNA7,8777,95074 bp+–
ATP8Protein-coding gene7,9528,119168 bp+48.8%
ATP6Protein-coding gene8,1108,793684 bp+47.7%
COX3Protein-coding gene8,7939,577785 bp+48.3%
tRNA-GlyTransfer RNA9,5789,64770 bp+–
ND3Protein-coding gene9,6489,996349 bp+47.9%
tRNA-ArgTransfer RNA9,99710,06670 bp+–
ND4LProtein-coding gene10,06710,363297 bp+51.9%
ND4Protein-coding gene10,35711,7371,381 bp+46.5%
tRNA-HisTransfer RNA11,73811,80669 bp+–
tRNA-Ser (AGY)Transfer RNA11,80711,87569 bp+–
tRNA-Leu (CUN)Transfer RNA11,87711,94973 bp+–
ND5Protein-coding gene11,95013,7881,839 bp+47.2%
ND6Protein-coding gene13,78514,306522 bp−50.6%
tRNA-GluTransfer RNA14,30714,37569 bp−–
CYTBProtein-coding gene14,37915,5191,141 bp+47.9%
tRNA-ThrTransfer RNA15,52015,59172 bp+–
tRNA-ProTransfer RNA15,59115,66070 bp−–
D-loopControl region15,66116,8641,204 bp–38.5%

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