Stigmatogobius pleurostigma
GC content
45.23%
Whole genome
Non-coding
900 bp
D-loop 841 bp
Where Stigmatogobius pleurostigma sits among 2,335 species
Whole-genome GC content against maximum lifespan. Stigmatogobius pleurostigma has the 2,158th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,494 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.047
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,494 bp
Protein-coding11,412 bp
12S rRNA949 bp
16S rRNA1,681 bp
All tRNA1,552 bp
D-loop841 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.95% | −0.344 | −0.047 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.75% | −0.501 | +0.074 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 45.95% | −0.213 | −0.095 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.73% | −0.266 | +0.019 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 43.03% | −0.549 | +0.170 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.81% | −0.401 | −0.053 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.54% | −0.221 | −0.054 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.345 | −0.207 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.417 | −0.111 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.27% | −0.358 | +0.024 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 44.08% | −0.387 | +0.039 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.435 | +0.438 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.329 | −0.084 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 45.52% | −0.083 | +0.226 | |||||
| 16S rRNA16S ribosomal RNA | 1,681 bp | 44.68% | −0.100 | +0.254 | |||||
| D-loopControl region (D-loop) | 841 bp | 36.39% | −0.150 | −0.050 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU108
UUC130
Leu L17.2%
UUA75
UUG14
CUU170
CUC148
CUA188
CUG60
Ile I7.0%
AUU149
AUC118
Met M4.4%
AUA124
AUG42
Val V5.8%
GUU61
GUC56
GUA74
GUG31
Ser S6.1%
UCU47
UCC63
UCA67
UCG5
AGU13
AGC38
Pro P5.9%
CCU49
CCC93
CCA76
CCG7
Thr T7.7%
ACU55
ACC93
ACA137
ACG8
Ala A9.3%
GCU60
GCC176
GCA118
GCG2
Tyr Y2.9%
UAU45
UAC65
His H2.7%
CAU22
CAC81
Gln Q2.7%
CAA83
CAG19
Asn N3.2%
AAU46
AAC77
Lys K1.9%
AAA62
AAG9
Asp D1.9%
GAU21
GAC52
Glu E2.5%
GAA70
GAG27
Cys C0.7%
UGU8
UGC19
Trp W3.0%
UGA98
UGG18
Arg R2.0%
CGU6
CGC8
CGA52
CGG10
Gly G6.5%
GGU29
GGC85
GGA75
GGG59
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_045524.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 45.5% |
| tRNA-Val | Transfer RNA | 1,018 | 1,089 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,772 | 1,681 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,773 | 2,846 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,847 | 3,821 | 975 bp | + | 46.0% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,893 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,893 | 3,963 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,963 | 4,031 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,077 | 1,046 bp | + | 46.8% |
| tRNA-Trp | Transfer RNA | 5,078 | 5,149 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,152 | 5,219 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,221 | 5,293 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,327 | 5,392 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,393 | 5,463 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,465 | 7,018 | 1,554 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,019 | 7,089 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,093 | 7,164 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,168 | 7,858 | 691 bp | + | 45.7% |
| tRNA-Lys | Transfer RNA | 7,859 | 7,934 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,936 | 8,100 | 165 bp | + | 43.0% |
| ATP6 | Protein-coding gene | 8,094 | 8,777 | 684 bp | + | 47.8% |
| COX3 | Protein-coding gene | 8,777 | 9,560 | 784 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,561 | 9,632 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,633 | 9,981 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,982 | 10,050 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,051 | 10,347 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,341 | 11,721 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,722 | 11,790 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,791 | 11,859 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,866 | 11,938 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,939 | 13,780 | 1,842 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,777 | 14,298 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,299 | 14,366 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,372 | 15,512 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,513 | 15,584 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,584 | 15,653 | 70 bp | − | – |
| D-loop | Control region | 15,654 | 16,494 | 841 bp | – | 36.4% |