Strongyloides ratti
Strongyloides ratti
GC content
23.52%
Whole genome
Non-coding
3,600 bp
Including the D-loop
Where Strongyloides ratti sits among 2,335 species
Whole-genome GC content against maximum lifespan. Strongyloides ratti has the 2,299th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome16,609 bp
- GC skew (G − C) / (G + C)
- +0.393
- AT skew (A − T) / (A + T)
- −0.460
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,609 bp
Protein-coding10,222 bp
12S rRNA695 bp
16S rRNA938 bp
All tRNA1,159 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 868 bp | 27.30% | +0.359 | −0.601 | |||||
| ND2NADH dehydrogenase subunit 2 | 843 bp | 18.86% | +0.396 | −0.605 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 30.10% | +0.305 | −0.418 | |||||
| COX2Cytochrome c oxidase subunit II | 693 bp | 29.15% | +0.436 | −0.438 | |||||
| ATP6ATP synthase F0 subunit 6 | 588 bp | 23.64% | +0.453 | −0.510 | |||||
| COX3Cytochrome c oxidase subunit III | 768 bp | 25.65% | +0.411 | −0.527 | |||||
| ND3NADH dehydrogenase subunit 3 | 336 bp | 21.13% | +0.746 | −0.577 | |||||
| ND4LNADH dehydrogenase subunit 4L | 235 bp | 19.15% | +0.556 | −0.663 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,225 bp | 23.51% | +0.465 | −0.618 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,578 bp | 22.62% | +0.462 | −0.597 | |||||
| ND6NADH dehydrogenase subunit 6 | 436 bp | 19.27% | +0.500 | −0.727 | |||||
| CYTBCytochrome b | 1,104 bp | 25.36% | +0.386 | −0.532 | |||||
| 12S rRNA12S ribosomal RNA | 695 bp | 29.35% | +0.294 | −0.096 | |||||
| 16S rRNA16S ribosomal RNA | 938 bp | 20.79% | +0.303 | −0.279 |
Codon usage
Counts per codon, darker is more frequent3,406 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F22.3%
UUU757
UUC3
Leu L13.5%
UUA118
UUG276
CUU62
CUC0
CUA2
CUG2
Ile I5.8%
AUU194
AUC2
Met M3.5%
AUA36
AUG83
Val V9.1%
GUU279
GUC2
GUA21
GUG8
Ser S11.3%
UCU209
UCC0
UCA7
UCG1
AGU110
AGC1
AGA42
AGG14
Pro P2.3%
CCU75
CCC1
CCA3
CCG1
Thr T2.5%
ACU83
ACC0
ACA3
ACG0
Ala A2.0%
GCU61
GCC0
GCA4
GCG3
Tyr Y5.1%
UAU173
UAC1
His H1.6%
CAU53
CAC2
Gln Q1.1%
CAA15
CAG21
Asn N3.1%
AAU104
AAC1
Lys K2.2%
AAA24
AAG50
Asp D2.1%
GAU68
GAC2
Glu E1.8%
GAA24
GAG36
Cys C2.2%
UGU74
UGC0
Trp W1.8%
UGA29
UGG33
Arg R0.9%
CGU27
CGC0
CGA5
CGG0
Gly G5.7%
GGU117
GGC3
GGA47
GGG26
Stop 0.2%
UAA4
UAG4
Genome map
35 annotated features in NC_028623.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding12
- rRNA2
- tRNA21
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (23.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 35 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| ND1 | Protein-coding gene | 1 | 868 | 868 bp | + | 27.3% |
| tRNA-Leu | Transfer RNA | 869 | 923 | 55 bp | + | – |
| tRNA-Ser | Transfer RNA | 934 | 984 | 51 bp | + | – |
| COX2 | Protein-coding gene | 985 | 1,677 | 693 bp | + | 29.2% |
| COX1 | Protein-coding gene | 1,683 | 3,230 | 1,548 bp | + | 30.1% |
| tRNA-Gln | Transfer RNA | 3,252 | 3,305 | 54 bp | + | – |
| tRNA-Ile | Transfer RNA | 3,309 | 3,368 | 60 bp | + | – |
| tRNA-Cys | Transfer RNA | 3,369 | 3,423 | 55 bp | + | – |
| CYTB | Protein-coding gene | 3,425 | 4,528 | 1,104 bp | + | 25.4% |
| tRNA-Ala | Transfer RNA | 5,147 | 5,201 | 55 bp | + | – |
| tRNA-Lys | Transfer RNA | 5,843 | 5,898 | 56 bp | + | – |
| tRNA-Glu | Transfer RNA | 5,903 | 5,958 | 56 bp | + | – |
| ND4L | Protein-coding gene | 6,009 | 6,243 | 235 bp | + | 19.2% |
| tRNA-Phe | Transfer RNA | 6,244 | 6,298 | 55 bp | + | – |
| 16S rRNA | Ribosomal RNA | 6,299 | 7,236 | 938 bp | + | 20.8% |
| ND6 | Protein-coding gene | 7,237 | 7,672 | 436 bp | + | 19.3% |
| tRNA-Thr | Transfer RNA | 7,673 | 7,727 | 55 bp | + | – |
| tRNA-Leu | Transfer RNA | 7,731 | 7,786 | 56 bp | + | – |
| ND4 | Protein-coding gene | 7,790 | 9,014 | 1,225 bp | + | 23.5% |
| tRNA-Trp | Transfer RNA | 9,015 | 9,071 | 57 bp | + | – |
| tRNA-Arg | Transfer RNA | 9,072 | 9,125 | 54 bp | + | – |
| tRNA-Ser | Transfer RNA | 9,137 | 9,188 | 52 bp | + | – |
| COX3 | Protein-coding gene | 9,199 | 9,966 | 768 bp | + | 25.7% |
| ATP6 | Protein-coding gene | 10,002 | 10,589 | 588 bp | + | 23.6% |
| tRNA-His | Transfer RNA | 10,593 | 10,648 | 56 bp | + | – |
| tRNA-Asn | Transfer RNA | 10,650 | 10,703 | 54 bp | + | – |
| tRNA-Tyr | Transfer RNA | 10,704 | 10,758 | 55 bp | + | – |
| ND2 | Protein-coding gene | 10,756 | 11,598 | 843 bp | + | 18.9% |
| tRNA-Asp | Transfer RNA | 12,474 | 12,529 | 56 bp | + | – |
| tRNA-Met | Transfer RNA | 13,720 | 13,777 | 58 bp | + | – |
| tRNA-Gly | Transfer RNA | 13,780 | 13,834 | 55 bp | + | – |
| 12S rRNA | Ribosomal RNA | 13,835 | 14,529 | 695 bp | + | 29.4% |
| tRNA-Pro | Transfer RNA | 14,528 | 14,581 | 54 bp | + | – |
| ND5 | Protein-coding gene | 14,586 | 16,163 | 1,578 bp | + | 22.6% |
| ND3 | Protein-coding gene | 16,209 | 16,544 | 336 bp | + | 21.1% |