MitoAge

Sundasciurus lowii

Low's squirrel

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Maximum lifespan
11.1 yr
AnAge record
mtDNA size
16,308 bp
RefSeq NC_035813.1
GC content
38.30%
Whole genome
Non-coding
924 bp
D-loop 821 bp

Where Low's squirrel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Low's squirrel has the 1,483rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Low's squirrel
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,308 bp
GC skew (G − C) / (G + C)
−0.323
AT skew (A − T) / (A + T)
+0.027

Life history

Maximum lifespan
11.1 years
Adult weight
67 g
Litter or clutch size
2.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03175)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,308 bp
Protein-coding11,331 bp
12S rRNA969 bp
16S rRNA1,579 bp
All tRNA1,505 bp
D-loop821 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.6%30.4%11.0%28.0%38.98%−0.437+0.003
ND2NADH dehydrogenase subunit 21,042 bp34.1%31.2%8.4%26.3%34.74%−0.514+0.044
COX1Cytochrome c oxidase subunit I1,542 bp27.2%33.0%17.0%22.8%39.82%−0.147−0.097
COX2Cytochrome c oxidase subunit II684 bp32.2%30.6%13.6%23.7%37.28%−0.271+0.026
ATP8ATP synthase F0 subunit 8204 bp32.8%29.4%6.4%31.4%37.75%−0.662+0.055
ATP6ATP synthase F0 subunit 6681 bp29.8%31.4%11.6%27.2%38.77%−0.402−0.026
COX3Cytochrome c oxidase subunit III784 bp26.9%30.7%13.9%28.4%42.35%−0.343−0.066
ND3NADH dehydrogenase subunit 3347 bp27.4%32.3%13.0%27.4%40.35%−0.357−0.082
ND4LNADH dehydrogenase subunit 4L297 bp31.6%34.7%10.8%22.9%33.67%−0.360−0.046
ND4NADH dehydrogenase subunit 41,378 bp31.4%30.8%10.2%27.6%37.81%−0.459+0.011
ND5NADH dehydrogenase subunit 51,818 bp31.0%31.5%9.8%27.6%37.46%−0.474−0.008
ND6NADH dehydrogenase subunit 6525 bp41.3%21.7%6.9%30.1%36.95%−0.629+0.311
CYTBCytochrome b1,140 bp27.2%30.7%12.8%29.3%42.11%−0.392−0.061
12S rRNA12S ribosomal RNA969 bp34.5%23.0%18.3%24.3%42.52%−0.141+0.199
16S rRNA16S ribosomal RNA1,579 bp36.9%27.0%16.5%19.6%36.16%−0.086+0.155
D-loopControl region (D-loop)821 bp28.5%32.9%15.1%23.5%38.61%−0.218−0.071

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU128
UUC124
Leu L16.1%
UUA138
UUG21
CUU120
CUC110
CUA197
CUG27
Ile I9.1%
AUU194
AUC153
Met M6.3%
AUA199
AUG41
Val V4.6%
GUU51
GUC49
GUA63
GUG11
Ser S7.8%
UCU71
UCC67
UCA103
UCG6
AGU18
AGC32
Pro P5.3%
CCU81
CCC59
CCA61
CCG0
Thr T7.5%
ACU72
ACC70
ACA137
ACG6
Ala A6.4%
GCU65
GCC88
GCA85
GCG6
Tyr Y3.4%
UAU67
UAC61
His H2.5%
CAU41
CAC55
Gln Q2.1%
CAA74
CAG6
Asn N4.4%
AAU76
AAC92
Lys K2.4%
AAA80
AAG12
Asp D1.8%
GAU35
GAC34
Glu E2.5%
GAA77
GAG19
Cys C0.6%
UGU6
UGC17
Trp W2.7%
UGA98
UGG5
Arg R1.7%
CGU9
CGC12
CGA40
CGG3
Gly G5.7%
GGU45
GGC48
GGA96
GGG28
Stop 0.2%
UAA7
UAG0
AGA2
AGG0

Genome map

38 annotated features in NC_035813.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,037969 bp+42.5%
tRNA-ValTransfer RNA1,0381,10467 bp+–
16S rRNARibosomal RNA1,1052,6831,579 bp+36.2%
tRNA-Leu (UUR)Transfer RNA2,6852,75975 bp+–
ND1Protein-coding gene2,7633,719957 bp+39.0%
tRNA-IleTransfer RNA3,7203,78869 bp+–
tRNA-GlnTransfer RNA3,7863,85873 bp−–
tRNA-MetTransfer RNA3,8613,93070 bp+–
ND2Protein-coding gene3,9314,9721,042 bp+34.7%
tRNA-TrpTransfer RNA4,9735,03967 bp+–
tRNA-AlaTransfer RNA5,0435,11068 bp−–
tRNA-AsnTransfer RNA5,1165,18873 bp−–
tRNA-CysTransfer RNA5,2215,28767 bp−–
tRNA-TyrTransfer RNA5,2895,35365 bp−–
COX1Protein-coding gene5,3626,9031,542 bp+39.8%
tRNA-Ser (UCN)Transfer RNA6,9086,97568 bp−–
tRNA-AspTransfer RNA6,9797,04769 bp+–
COX2Protein-coding gene7,0497,732684 bp+37.3%
tRNA-LysTransfer RNA7,7367,80368 bp+–
ATP8Protein-coding gene7,8058,008204 bp+37.7%
ATP6Protein-coding gene7,9668,646681 bp+38.8%
COX3Protein-coding gene8,6469,429784 bp+42.4%
tRNA-GlyTransfer RNA9,4309,50172 bp+–
ND3Protein-coding gene9,5029,848347 bp+40.4%
tRNA-ArgTransfer RNA9,8509,91667 bp+–
ND4LProtein-coding gene9,91810,214297 bp+33.7%
ND4Protein-coding gene10,20811,5851,378 bp+37.8%
tRNA-HisTransfer RNA11,58611,65469 bp+–
tRNA-Ser (AGY)Transfer RNA11,65611,71358 bp+–
tRNA-Leu (CUN)Transfer RNA11,71511,78470 bp+–
ND5Protein-coding gene11,78513,6021,818 bp+37.5%
ND6Protein-coding gene13,58614,110525 bp−37.0%
tRNA-GluTransfer RNA14,11114,17969 bp−–
CYTBProtein-coding gene14,18415,3231,140 bp+42.1%
tRNA-ThrTransfer RNA15,32515,39268 bp+–
tRNA-ProTransfer RNA15,39615,46368 bp−–
D-loopControl region15,48816,308821 bp–38.6%

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