Syngnathus scovelli
Gulf pipefish
GC content
43.28%
Whole genome
Non-coding
941 bp
D-loop 887 bp
Where Gulf pipefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gulf pipefish has the 2,211th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,470 bp
- GC skew (G − C) / (G + C)
- −0.259
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,470 bp
Protein-coding11,397 bp
12S rRNA934 bp
16S rRNA1,666 bp
All tRNA1,532 bp
D-loop887 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.51% | −0.359 | −0.046 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 43.28% | −0.512 | +0.005 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.91% | −0.175 | −0.129 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.09% | −0.271 | −0.024 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.82% | −0.449 | +0.083 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.15% | −0.444 | −0.136 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.22% | −0.256 | −0.112 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.294 | −0.235 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.415 | −0.107 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.80% | −0.360 | −0.023 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 43.03% | −0.337 | −0.038 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.34% | −0.394 | +0.442 | |||||
| CYTBCytochrome b | 1,141 bp | 44.87% | −0.281 | −0.072 | |||||
| 12S rRNA12S ribosomal RNA | 934 bp | 45.82% | −0.051 | +0.170 | |||||
| 16S rRNA16S ribosomal RNA | 1,666 bp | 42.86% | −0.076 | +0.189 | |||||
| D-loopControl region (D-loop) | 887 bp | 36.64% | −0.151 | +0.050 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU119
UUC116
Leu L17.5%
UUA150
UUG27
CUU154
CUC130
CUA157
CUG46
Ile I7.0%
AUU155
AUC113
Met M4.2%
AUA111
AUG48
Val V5.6%
GUU64
GUC55
GUA66
GUG29
Ser S7.3%
UCU54
UCC76
UCA85
UCG12
AGU24
AGC28
Pro P5.7%
CCU78
CCC86
CCA48
CCG4
Thr T7.7%
ACU64
ACC114
ACA101
ACG15
Ala A8.6%
GCU68
GCC144
GCA102
GCG12
Tyr Y3.0%
UAU51
UAC62
His H2.6%
CAU36
CAC63
Gln Q2.6%
CAA93
CAG6
Asn N3.2%
AAU53
AAC69
Lys K2.1%
AAA72
AAG8
Asp D1.9%
GAU33
GAC40
Glu E2.5%
GAA82
GAG15
Cys C0.6%
UGU12
UGC12
Trp W3.2%
UGA99
UGG21
Arg R2.0%
CGU11
CGC19
CGA38
CGG8
Gly G6.3%
GGU60
GGC64
GGA74
GGG41
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_065499.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 67 | 67 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,001 | 934 bp | + | 45.8% |
| tRNA-Val | Transfer RNA | 1,002 | 1,073 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,074 | 2,739 | 1,666 bp | + | 42.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,740 | 2,812 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,813 | 3,787 | 975 bp | + | 44.5% |
| tRNA-Ile | Transfer RNA | 3,788 | 3,857 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,857 | 3,926 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,928 | 3,996 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,997 | 5,038 | 1,042 bp | + | 43.3% |
| tRNA-Trp | Transfer RNA | 5,039 | 5,106 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,107 | 5,175 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,177 | 5,249 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,286 | 5,350 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,351 | 5,417 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,419 | 6,969 | 1,551 bp | + | 43.9% |
| tRNA-Ser (UCN) | Transfer RNA | 6,970 | 7,040 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,044 | 7,111 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,115 | 7,805 | 691 bp | + | 40.1% |
| tRNA-Lys | Transfer RNA | 7,806 | 7,881 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,883 | 8,047 | 165 bp | + | 41.8% |
| ATP6 | Protein-coding gene | 8,038 | 8,721 | 684 bp | + | 44.2% |
| COX3 | Protein-coding gene | 8,721 | 9,505 | 785 bp | + | 45.2% |
| tRNA-Gly | Transfer RNA | 9,506 | 9,575 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,576 | 9,924 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 9,925 | 9,993 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,994 | 10,290 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,284 | 11,664 | 1,381 bp | + | 42.8% |
| tRNA-His | Transfer RNA | 11,665 | 11,733 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,734 | 11,801 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,804 | 11,874 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,875 | 13,710 | 1,836 bp | + | 43.0% |
| ND6 | Protein-coding gene | 13,707 | 14,228 | 522 bp | − | 42.3% |
| tRNA-Glu | Transfer RNA | 14,229 | 14,296 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,303 | 15,443 | 1,141 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,444 | 15,515 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,515 | 15,583 | 69 bp | − | – |
| D-loop | Control region | 15,584 | 16,470 | 887 bp | – | 36.6% |