Tamias sibiricus
Siberian chipmunk
GC content
35.08%
Whole genome
Non-coding
1,162 bp
D-loop 1,090 bp
Where Siberian chipmunk sits among 2,335 species
Whole-genome GC content against maximum lifespan. Siberian chipmunk has the 1,626th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,558 bp
- GC skew (G − C) / (G + C)
- −0.305
- AT skew (A − T) / (A + T)
- +0.041
Life history
- Maximum lifespan
- 9.6 years
- Adult weight
- 85 g
- Birth weight
- 4 g
- Female sexual maturity
- 350 days
- Male sexual maturity
- 350 days
- Gestation or incubation
- 35 days
- Litter or clutch size
- 4.8
- Litters per year
- 1.1
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03183)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,558 bp
Protein-coding11,328 bp
12S rRNA965 bp
16S rRNA1,595 bp
All tRNA1,508 bp
D-loop1,090 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 956 bp | 37.55% | −0.432 | +0.039 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 32.44% | −0.515 | +0.048 | |||||
| COX1Cytochrome c oxidase subunit I | 1,542 bp | 36.84% | −0.141 | −0.053 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 35.23% | −0.261 | +0.002 | |||||
| ATP8ATP synthase F0 subunit 8 | 204 bp | 30.88% | −0.587 | +0.135 | |||||
| ATP6ATP synthase F0 subunit 6 | 680 bp | 34.41% | −0.427 | +0.004 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 37.37% | −0.222 | −0.051 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 32.66% | −0.345 | −0.047 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 29.97% | −0.303 | −0.125 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 33.53% | −0.442 | −0.004 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 32.62% | −0.423 | +0.020 | |||||
| ND6NADH dehydrogenase subunit 6 | 525 bp | 34.48% | −0.591 | +0.314 | |||||
| CYTBCytochrome b | 1,139 bp | 37.75% | −0.381 | −0.030 | |||||
| 12S rRNA12S ribosomal RNA | 965 bp | 39.38% | −0.111 | +0.179 | |||||
| 16S rRNA16S ribosomal RNA | 1,595 bp | 35.24% | −0.093 | +0.187 | |||||
| D-loopControl region (D-loop) | 1,090 bp | 35.60% | −0.345 | −0.026 |
Codon usage
Counts per codon, darker is more frequent3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.8%
UUU162
UUC95
Leu L15.8%
UUA195
UUG12
CUU107
CUC55
CUA221
CUG9
Ile I9.8%
AUU264
AUC109
Met M6.5%
AUA219
AUG28
Val V4.3%
GUU57
GUC18
GUA77
GUG11
Ser S7.7%
UCU71
UCC43
UCA127
UCG4
AGU17
AGC29
Pro P5.2%
CCU61
CCC47
CCA87
CCG1
Thr T7.7%
ACU82
ACC68
ACA140
ACG3
Ala A6.1%
GCU49
GCC74
GCA104
GCG3
Tyr Y3.3%
UAU78
UAC48
His H2.5%
CAU47
CAC48
Gln Q2.3%
CAA82
CAG5
Asn N4.1%
AAU75
AAC82
Lys K2.5%
AAA91
AAG4
Asp D1.9%
GAU39
GAC34
Glu E2.5%
GAA82
GAG13
Cys C0.7%
UGU10
UGC17
Trp W2.8%
UGA100
UGG5
Arg R1.7%
CGU8
CGC10
CGA44
CGG2
Gly G5.7%
GGU42
GGC33
GGA122
GGG19
Stop 0.2%
UAA4
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_025277.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (35.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,035 | 965 bp | + | 39.4% |
| tRNA-Val | Transfer RNA | 1,036 | 1,104 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,105 | 2,699 | 1,595 bp | + | 35.2% |
| tRNA-Leu (CUN) | Transfer RNA | 2,700 | 2,774 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,778 | 3,733 | 956 bp | + | 37.6% |
| tRNA-Ile | Transfer RNA | 3,734 | 3,803 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,801 | 3,870 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 3,874 | 3,942 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,943 | 4,984 | 1,042 bp | + | 32.4% |
| tRNA-Trp | Transfer RNA | 4,985 | 5,050 | 66 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,054 | 5,122 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,128 | 5,200 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,232 | 5,298 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,299 | 5,366 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,374 | 6,915 | 1,542 bp | + | 36.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,918 | 6,986 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,990 | 7,059 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,060 | 7,743 | 684 bp | + | 35.2% |
| tRNA-Lys | Transfer RNA | 7,747 | 7,814 | 68 bp | + | – |
| ATP8 | Protein-coding gene | 7,816 | 8,019 | 204 bp | + | 30.9% |
| ATP6 | Protein-coding gene | 7,977 | 8,656 | 680 bp | + | 34.4% |
| COX3 | Protein-coding gene | 8,657 | 9,440 | 784 bp | + | 37.4% |
| tRNA-Gly | Transfer RNA | 9,441 | 9,509 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,510 | 9,855 | 346 bp | + | 32.7% |
| tRNA-Arg | Transfer RNA | 9,856 | 9,922 | 67 bp | + | – |
| ND4L | Protein-coding gene | 9,925 | 10,221 | 297 bp | + | 30.0% |
| ND4 | Protein-coding gene | 10,215 | 11,592 | 1,378 bp | + | 33.5% |
| tRNA-His | Transfer RNA | 11,593 | 11,661 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,663 | 11,720 | 58 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,721 | 11,790 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,791 | 13,608 | 1,818 bp | + | 32.6% |
| ND6 | Protein-coding gene | 13,592 | 14,116 | 525 bp | − | 34.5% |
| tRNA-Glu | Transfer RNA | 14,117 | 14,185 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,190 | 15,328 | 1,139 bp | + | 37.8% |
| tRNA-Thr | Transfer RNA | 15,329 | 15,396 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,401 | 15,468 | 68 bp | − | – |
| D-loop | Control region | 15,469 | 16,558 | 1,090 bp | – | 35.6% |