Tarentola mauritanica
Common wall gecko
GC content
44.62%
Whole genome
Non-coding
1,302 bp
Including the D-loop
Where Common wall gecko sits among 2,335 species
Whole-genome GC content against maximum lifespan. Common wall gecko has the 1,286th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome16,593 bp
- GC skew (G − C) / (G + C)
- −0.325
- AT skew (A − T) / (A + T)
- +0.143
Life history
- Maximum lifespan
- 14 years
- Adult weight
- 6.5 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03535)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,593 bp
Protein-coding11,265 bp
12S rRNA943 bp
16S rRNA1,549 bp
All tRNA1,542 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 969 bp | 46.54% | −0.388 | +0.120 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,036 bp | 44.79% | −0.517 | +0.224 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 47.65% | −0.201 | −0.036 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 44.77% | −0.331 | +0.153 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 46.06% | −0.579 | +0.213 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 44.64% | −0.507 | +0.151 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.43% | −0.264 | +0.038 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 47.98% | −0.361 | −0.011 | |||||
| ND4LNADH dehydrogenase subunit 4L | 296 bp | 44.26% | −0.466 | +0.152 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,350 bp | 43.56% | −0.442 | +0.163 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,794 bp | 45.37% | −0.388 | +0.145 | |||||
| ND6NADH dehydrogenase subunit 6 | 537 bp | 45.62% | −0.592 | +0.575 | |||||
| CYTBCytochrome b | 1,123 bp | 45.68% | −0.423 | +0.075 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 49.10% | −0.222 | +0.271 | |||||
| 16S rRNA16S ribosomal RNA | 1,549 bp | 47.06% | −0.281 | +0.329 |
Codon usage
Counts per codon, darker is more frequent3,765 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.3%
UUU73
UUC125
Leu L17.0%
UUA111
UUG31
CUU89
CUC89
CUA264
CUG57
Ile I6.7%
AUU102
AUC151
Met M5.3%
AUA159
AUG42
Val V4.8%
GUU44
GUC33
GUA73
GUG29
Ser S6.1%
UCU29
UCC55
UCA86
UCG7
AGU9
AGC43
Pro P5.8%
CCU28
CCC47
CCA126
CCG18
Thr T10.9%
ACU33
ACC179
ACA185
ACG12
Ala A8.4%
GCU33
GCC173
GCA102
GCG10
Tyr Y2.8%
UAU36
UAC71
His H3.0%
CAU20
CAC93
Gln Q2.6%
CAA78
CAG19
Asn N3.2%
AAU21
AAC100
Lys K2.3%
AAA72
AAG15
Asp D1.7%
GAU18
GAC45
Glu E2.3%
GAA60
GAG27
Cys C0.8%
UGU13
UGC19
Trp W2.8%
UGA83
UGG24
Arg R1.9%
CGU10
CGC23
CGA30
CGG8
Gly G6.0%
GGU29
GGC73
GGA76
GGG49
Stop 0.2%
UAA3
UAG3
AGA0
AGG0
Genome map
37 annotated features in NC_012366.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,013 | 943 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,014 | 1,082 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,631 | 1,549 bp | + | 47.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,632 | 2,708 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,709 | 3,677 | 969 bp | + | 46.5% |
| tRNA-Ile | Transfer RNA | 3,683 | 3,753 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,754 | 3,825 | 72 bp | + | – |
| tRNA-Met | Transfer RNA | 3,826 | 3,895 | 70 bp | + | – |
| ND2 | Protein-coding gene | 3,896 | 4,931 | 1,036 bp | + | 44.8% |
| tRNA-Trp | Transfer RNA | 4,932 | 5,001 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,003 | 5,069 | 67 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,071 | 5,145 | 75 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,176 | 5,239 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,241 | 5,310 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,312 | 6,845 | 1,534 bp | + | 47.7% |
| tRNA-Ser (UCN) | Transfer RNA | 6,863 | 6,933 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,935 | 7,009 | 75 bp | + | – |
| COX2 | Protein-coding gene | 7,005 | 7,692 | 688 bp | + | 44.8% |
| tRNA-Lys | Transfer RNA | 7,693 | 7,759 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 7,760 | 7,924 | 165 bp | + | 46.1% |
| ATP6 | Protein-coding gene | 7,915 | 8,595 | 681 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,595 | 9,378 | 784 bp | + | 46.4% |
| tRNA-Gly | Transfer RNA | 9,379 | 9,448 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,449 | 9,794 | 346 bp | + | 48.0% |
| tRNA-Arg | Transfer RNA | 9,792 | 9,864 | 73 bp | + | – |
| ND4L | Protein-coding gene | 9,866 | 10,161 | 296 bp | + | 44.3% |
| ND4 | Protein-coding gene | 10,166 | 11,515 | 1,350 bp | + | 43.6% |
| tRNA-His | Transfer RNA | 11,517 | 11,584 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,585 | 11,644 | 60 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,651 | 11,722 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,723 | 13,516 | 1,794 bp | + | 45.4% |
| ND6 | Protein-coding gene | 13,490 | 14,026 | 537 bp | − | 45.6% |
| tRNA-Glu | Transfer RNA | 14,030 | 14,102 | 73 bp | + | – |
| CYTB | Protein-coding gene | 14,103 | 15,225 | 1,123 bp | + | 45.7% |
| tRNA-Thr | Transfer RNA | 15,276 | 15,345 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,346 | 15,413 | 68 bp | − | – |