Thinornis dubius
Little ringed plover
GC content
45.01%
Whole genome
Non-coding
448 bp
Including the D-loop
Where Little ringed plover sits among 2,335 species
Whole-genome GC content against maximum lifespan. Little ringed plover has the 1,374th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome15,933 bp
- GC skew (G − C) / (G + C)
- −0.395
- AT skew (A − T) / (A + T)
- +0.139
Life history
- Maximum lifespan
- 13 years
- Adult weight
- 38.7 g
- Basal metabolic rate
- 0.416 W
- Female sexual maturity
- 2 years
- Male sexual maturity
- 2 years
- Postnatal growth rate
- 0.138 per day
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00424)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,933 bp
Protein-coding11,382 bp
12S rRNA974 bp
16S rRNA1,591 bp
All tRNA1,549 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 45.19% | −0.421 | +0.034 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 44.56% | −0.512 | +0.139 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.58% | −0.306 | +0.063 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 45.47% | −0.376 | +0.137 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.735 | +0.120 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.47% | −0.563 | +0.105 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.90% | −0.335 | +0.083 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 46.44% | −0.448 | +0.053 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.431 | +0.125 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 43.54% | −0.567 | +0.162 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 44.13% | −0.523 | +0.183 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 46.21% | −0.574 | +0.570 | |||||
| CYTBCytochrome b | 1,143 bp | 46.54% | −0.440 | +0.051 | |||||
| 12S rRNA12S ribosomal RNA | 974 bp | 47.84% | −0.124 | +0.189 | |||||
| 16S rRNA16S ribosomal RNA | 1,591 bp | 44.31% | −0.174 | +0.257 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU59
UUC162
Leu L17.3%
UUA88
UUG20
CUU56
CUC141
CUA310
CUG43
Ile I7.8%
AUU77
AUC218
Met M4.6%
AUA148
AUG25
Val V4.4%
GUU30
GUC43
GUA70
GUG23
Ser S7.6%
UCU28
UCC93
UCA107
UCG5
AGU6
AGC48
Pro P5.7%
CCU26
CCC64
CCA122
CCG5
Thr T9.2%
ACU61
ACC146
ACA143
ACG1
Ala A7.8%
GCU53
GCC131
GCA103
GCG8
Tyr Y3.1%
UAU34
UAC83
His H2.8%
CAU22
CAC86
Gln Q2.6%
CAA85
CAG12
Asn N3.6%
AAU17
AAC118
Lys K2.3%
AAA78
AAG9
Asp D1.6%
GAU16
GAC46
Glu E2.5%
GAA79
GAG15
Cys C0.8%
UGU7
UGC24
Trp W2.8%
UGA95
UGG11
Arg R1.8%
CGU7
CGC18
CGA42
CGG3
Gly G5.8%
GGU31
GGC69
GGA86
GGG33
Stop 0.3%
UAA7
UAG1
AGA0
AGG2
Genome map
37 annotated features in NC_061228.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,044 | 974 bp | + | 47.8% |
| tRNA-Val | Transfer RNA | 1,045 | 1,116 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,117 | 2,707 | 1,591 bp | + | 44.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,709 | 2,782 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,789 | 3,766 | 978 bp | + | 45.2% |
| tRNA-Ile | Transfer RNA | 3,765 | 3,837 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,847 | 3,917 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,917 | 3,985 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,986 | 5,024 | 1,039 bp | + | 44.6% |
| tRNA-Trp | Transfer RNA | 5,025 | 5,095 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,097 | 5,165 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,168 | 5,240 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,244 | 5,310 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,310 | 5,380 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,382 | 6,932 | 1,551 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 6,924 | 6,997 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,000 | 7,068 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,070 | 7,753 | 684 bp | + | 45.5% |
| tRNA-Lys | Transfer RNA | 7,755 | 7,823 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,825 | 7,992 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 7,983 | 8,666 | 684 bp | + | 45.5% |
| COX3 | Protein-coding gene | 8,666 | 9,449 | 784 bp | + | 44.9% |
| tRNA-Gly | Transfer RNA | 9,450 | 9,518 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,519 | 9,870 | 352 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 9,875 | 9,944 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,946 | 10,242 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,236 | 11,613 | 1,378 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,614 | 11,683 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,685 | 11,749 | 65 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,749 | 11,819 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,820 | 13,634 | 1,815 bp | + | 44.1% |
| CYTB | Protein-coding gene | 13,648 | 14,790 | 1,143 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 14,795 | 14,865 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,880 | 14,949 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,959 | 15,486 | 528 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 15,490 | 15,563 | 74 bp | − | – |