Thoburnia rhothoeca
Torrent sucker
GC content
43.54%
Whole genome
Non-coding
1,024 bp
D-loop 955 bp
Where Torrent sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Torrent sucker has the 1,837th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,626 bp
- GC skew (G − C) / (G + C)
- −0.184
- AT skew (A − T) / (A + T)
- +0.037
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,626 bp
Protein-coding11,407 bp
12S rRNA950 bp
16S rRNA1,682 bp
All tRNA1,563 bp
D-loop955 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.33% | −0.222 | −0.017 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.55% | −0.294 | +0.040 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.10% | −0.142 | −0.091 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.189 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.353 | +0.120 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 40.70% | −0.273 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.33% | −0.149 | −0.076 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.280 | −0.085 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.194 | −0.141 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.19% | −0.259 | +0.006 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.03% | −0.281 | +0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.49% | −0.322 | +0.397 | |||||
| CYTBCytochrome b | 1,141 bp | 43.73% | −0.222 | −0.097 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 48.95% | −0.054 | +0.208 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 44.59% | −0.029 | +0.247 | |||||
| D-loopControl region (D-loop) | 955 bp | 37.59% | −0.153 | +0.044 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU134
UUC90
Leu L16.4%
UUA159
UUG36
CUU131
CUC60
CUA169
CUG68
Ile I7.3%
AUU188
AUC88
Met M4.3%
AUA104
AUG58
Val V6.3%
GUU69
GUC37
GUA102
GUG32
Ser S6.5%
UCU57
UCC54
UCA74
UCG9
AGU14
AGC39
Pro P5.6%
CCU42
CCC72
CCA81
CCG18
Thr T7.8%
ACU57
ACC104
ACA112
ACG24
Ala A9.2%
GCU80
GCC134
GCA116
GCG20
Tyr Y3.0%
UAU57
UAC59
His H2.8%
CAU37
CAC69
Gln Q2.6%
CAA77
CAG22
Asn N3.1%
AAU51
AAC68
Lys K2.0%
AAA65
AAG12
Asp D2.1%
GAU33
GAC47
Glu E2.7%
GAA76
GAG27
Cys C0.7%
UGU9
UGC17
Trp W3.2%
UGA95
UGG26
Arg R2.0%
CGU5
CGC11
CGA47
CGG13
Gly G6.4%
GGU30
GGC45
GGA118
GGG52
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_031633.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,773 | 1,682 bp | + | 44.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,774 | 2,848 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,850 | 3,824 | 975 bp | + | 45.3% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,906 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,090 | 1,045 bp | + | 45.6% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,163 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,476 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 42.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,175 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,190 | 7,880 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,881 | 7,956 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,958 | 8,125 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,116 | 8,798 | 683 bp | + | 40.7% |
| COX3 | Protein-coding gene | 8,799 | 9,583 | 785 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,584 | 9,655 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,656 | 10,004 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 10,005 | 10,074 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,075 | 10,371 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,365 | 11,746 | 1,382 bp | + | 42.2% |
| tRNA-His | Transfer RNA | 11,747 | 11,816 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,816 | 11,886 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,887 | 11,959 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,960 | 13,798 | 1,839 bp | + | 42.0% |
| ND6 | Protein-coding gene | 13,795 | 14,316 | 522 bp | − | 43.5% |
| tRNA-Glu | Transfer RNA | 14,317 | 14,385 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,390 | 15,530 | 1,141 bp | + | 43.7% |
| tRNA-Thr | Transfer RNA | 15,531 | 15,602 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,602 | 15,671 | 70 bp | − | – |
| D-loop | Control region | 15,672 | 16,626 | 955 bp | – | 37.6% |