Thryssa hamiltonii
Hamilton's thryssa
GC content
44.46%
Whole genome
Non-coding
1,149 bp
D-loop 1,090 bp
Where Hamilton's thryssa sits among 2,335 species
Whole-genome GC content against maximum lifespan. Hamilton's thryssa has the 2,136th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,737 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.105
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,737 bp
Protein-coding11,396 bp
12S rRNA953 bp
16S rRNA1,689 bp
All tRNA1,550 bp
D-loop1,090 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.64% | −0.335 | +0.049 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.88% | −0.480 | +0.205 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 43.43% | −0.142 | −0.055 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.233 | +0.059 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.69% | −0.415 | +0.087 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.11% | −0.417 | +0.030 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.01% | −0.268 | −0.014 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.27% | −0.325 | −0.020 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.81% | −0.338 | +0.032 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.90% | −0.374 | +0.054 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,835 bp | 42.62% | −0.366 | +0.111 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.511 | +0.557 | |||||
| CYTBCytochrome b | 1,141 bp | 44.70% | −0.278 | −0.021 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 49.42% | −0.113 | +0.241 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 44.82% | −0.118 | +0.309 | |||||
| D-loopControl region (D-loop) | 1,090 bp | 38.81% | −0.182 | +0.025 |
Codon usage
Counts per codon, darker is more frequent3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU116
UUC108
Leu L16.3%
UUA107
UUG27
CUU115
CUC109
CUA216
CUG44
Ile I7.4%
AUU152
AUC131
Met M4.4%
AUA131
AUG36
Val V5.9%
GUU45
GUC53
GUA89
GUG37
Ser S6.1%
UCU26
UCC63
UCA75
UCG8
AGU20
AGC41
Pro P5.6%
CCU45
CCC77
CCA86
CCG6
Thr T8.5%
ACU37
ACC129
ACA147
ACG12
Ala A9.2%
GCU61
GCC132
GCA147
GCG11
Tyr Y3.0%
UAU48
UAC67
His H2.7%
CAU27
CAC77
Gln Q2.6%
CAA85
CAG14
Asn N3.3%
AAU39
AAC87
Lys K2.1%
AAA70
AAG8
Asp D1.9%
GAU29
GAC45
Glu E2.7%
GAA79
GAG22
Cys C0.8%
UGU11
UGC19
Trp W3.2%
UGA102
UGG18
Arg R1.9%
CGU7
CGC14
CGA42
CGG10
Gly G6.3%
GGU26
GGC46
GGA120
GGG46
Stop 0.2%
UAA5
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_036672.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 49.4% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,783 | 1,689 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,858 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 45.6% |
| tRNA-Ile | Transfer RNA | 3,836 | 3,907 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,045 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,046 | 5,090 | 1,045 bp | + | 44.9% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,162 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,475 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,477 | 7,021 | 1,545 bp | + | 43.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,166 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,942 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 38.7% |
| ATP6 | Protein-coding gene | 8,102 | 8,785 | 684 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,785 | 9,569 | 785 bp | + | 47.0% |
| tRNA-Gly | Transfer RNA | 9,570 | 9,641 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,990 | 349 bp | + | 43.3% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,059 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,060 | 10,356 | 297 bp | + | 47.8% |
| ND4 | Protein-coding gene | 10,350 | 11,730 | 1,381 bp | + | 44.9% |
| tRNA-His | Transfer RNA | 11,731 | 11,799 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,801 | 11,867 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,868 | 11,939 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,940 | 13,774 | 1,835 bp | + | 42.6% |
| ND6 | Protein-coding gene | 13,771 | 14,292 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,293 | 14,361 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,366 | 15,506 | 1,141 bp | + | 44.7% |
| tRNA-Thr | Transfer RNA | 15,507 | 15,576 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,576 | 15,647 | 72 bp | − | – |
| D-loop | Control region | 15,648 | 16,737 | 1,090 bp | – | 38.8% |