Thryssa kammalensis
Kammal thryssa
GC content
43.26%
Whole genome
Non-coding
1,379 bp
D-loop 1,320 bp
Where Kammal thryssa sits among 2,335 species
Whole-genome GC content against maximum lifespan. Kammal thryssa has the 2,227th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,968 bp
- GC skew (G − C) / (G + C)
- −0.235
- AT skew (A − T) / (A + T)
- +0.062
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,968 bp
Protein-coding11,397 bp
12S rRNA954 bp
16S rRNA1,691 bp
All tRNA1,547 bp
D-loop1,320 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.13% | −0.286 | −0.013 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.79% | −0.415 | +0.076 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 41.75% | −0.122 | −0.071 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.52% | −0.207 | +0.012 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.91% | −0.419 | +0.057 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.54% | −0.375 | −0.028 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.84% | −0.244 | −0.039 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.12% | −0.252 | −0.069 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.43% | −0.271 | −0.024 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.88% | −0.300 | +0.035 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.89% | −0.329 | +0.057 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.21% | −0.407 | +0.455 | |||||
| CYTBCytochrome b | 1,141 bp | 43.47% | −0.262 | −0.054 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 49.79% | −0.124 | +0.223 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 45.00% | −0.099 | +0.269 | |||||
| D-loopControl region (D-loop) | 1,320 bp | 33.41% | −0.170 | +0.017 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU128
UUC99
Leu L16.1%
UUA113
UUG21
CUU140
CUC88
CUA205
CUG45
Ile I7.7%
AUU204
AUC89
Met M4.4%
AUA128
AUG39
Val V5.9%
GUU58
GUC46
GUA87
GUG35
Ser S6.0%
UCU36
UCC45
UCA80
UCG10
AGU17
AGC42
Pro P5.8%
CCU52
CCC79
CCA85
CCG6
Thr T8.4%
ACU58
ACC112
ACA130
ACG19
Ala A9.2%
GCU59
GCC135
GCA133
GCG22
Tyr Y3.1%
UAU72
UAC46
His H2.7%
CAU30
CAC71
Gln Q2.6%
CAA78
CAG21
Asn N3.2%
AAU52
AAC70
Lys K2.0%
AAA59
AAG18
Asp D2.0%
GAU17
GAC58
Glu E2.7%
GAA70
GAG31
Cys C0.7%
UGU11
UGC17
Trp W3.2%
UGA101
UGG19
Arg R1.9%
CGU9
CGC9
CGA42
CGG13
Gly G6.3%
GGU30
GGC45
GGA113
GGG50
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_029940.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,023 | 954 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,024 | 1,095 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,786 | 1,691 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,861 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 45.1% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,978 | 4,046 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,047 | 5,091 | 1,045 bp | + | 46.8% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,162 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,403 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,474 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,020 | 1,545 bp | + | 41.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,021 | 7,091 | 71 bp | + | – |
| tRNA-Asp | Transfer RNA | 7,097 | 7,165 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 40.5% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,940 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,942 | 8,109 | 168 bp | + | 36.9% |
| ATP6 | Protein-coding gene | 8,100 | 8,783 | 684 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,783 | 9,567 | 785 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,568 | 9,639 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,640 | 9,988 | 349 bp | + | 42.1% |
| tRNA-Arg | Transfer RNA | 9,989 | 10,057 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,058 | 10,354 | 297 bp | + | 43.4% |
| ND4 | Protein-coding gene | 10,348 | 11,728 | 1,381 bp | + | 43.9% |
| tRNA-His | Transfer RNA | 11,729 | 11,797 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,799 | 11,865 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,866 | 11,937 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,938 | 13,773 | 1,836 bp | + | 41.9% |
| ND6 | Protein-coding gene | 13,770 | 14,291 | 522 bp | − | 45.2% |
| tRNA-Glu | Transfer RNA | 14,292 | 14,360 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,368 | 15,508 | 1,141 bp | + | 43.5% |
| tRNA-Thr | Transfer RNA | 15,509 | 15,578 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,579 | 15,648 | 70 bp | − | – |
| D-loop | Control region | 15,649 | 16,968 | 1,320 bp | – | 33.4% |