Thryssa setirostris
Longjaw thryssa
GC content
46.00%
Whole genome
Non-coding
1,341 bp
D-loop 1,282 bp
Where Longjaw thryssa sits among 2,335 species
Whole-genome GC content against maximum lifespan. Longjaw thryssa has the 2,228th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,926 bp
- GC skew (G − C) / (G + C)
- −0.271
- AT skew (A − T) / (A + T)
- +0.110
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,926 bp
Protein-coding11,396 bp
12S rRNA952 bp
16S rRNA1,687 bp
All tRNA1,550 bp
D-loop1,282 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.90% | −0.370 | +0.079 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.04% | −0.442 | +0.131 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 46.15% | −0.144 | −0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.258 | +0.059 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.417 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.20% | −0.430 | +0.054 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.77% | −0.264 | +0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.273 | 0.000 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.324 | +0.060 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.04% | −0.350 | +0.083 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.99% | −0.368 | +0.127 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.81% | −0.515 | +0.603 | |||||
| CYTBCytochrome b | 1,141 bp | 45.93% | −0.298 | −0.011 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 50.84% | −0.132 | +0.235 | |||||
| 16S rRNA16S ribosomal RNA | 1,687 bp | 46.53% | −0.129 | +0.319 | |||||
| D-loopControl region (D-loop) | 1,282 bp | 36.90% | −0.180 | +0.021 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU90
UUC134
Leu L16.0%
UUA65
UUG27
CUU119
CUC129
CUA218
CUG52
Ile I7.4%
AUU125
AUC158
Met M4.3%
AUA116
AUG49
Val V6.0%
GUU39
GUC50
GUA83
GUG55
Ser S5.9%
UCU32
UCC60
UCA66
UCG11
AGU11
AGC43
Pro P5.7%
CCU42
CCC83
CCA76
CCG14
Thr T8.6%
ACU38
ACC130
ACA142
ACG19
Ala A9.4%
GCU48
GCC138
GCA143
GCG28
Tyr Y3.0%
UAU45
UAC70
His H2.7%
CAU26
CAC78
Gln Q2.6%
CAA84
CAG16
Asn N3.4%
AAU29
AAC102
Lys K2.0%
AAA62
AAG15
Asp D2.0%
GAU25
GAC50
Glu E2.7%
GAA75
GAG26
Cys C0.8%
UGU10
UGC19
Trp W3.2%
UGA106
UGG14
Arg R1.9%
CGU4
CGC17
CGA43
CGG10
Gly G6.3%
GGU33
GGC43
GGA106
GGG56
Stop 0.2%
UAA6
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_038196.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,021 | 952 bp | + | 50.8% |
| tRNA-Val | Transfer RNA | 1,022 | 1,093 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,780 | 1,687 bp | + | 46.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,855 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,857 | 3,831 | 975 bp | + | 47.9% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,904 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,042 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,087 | 1,045 bp | + | 48.0% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,159 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,400 | 66 bp | + | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,470 | 70 bp | + | – |
| COX1 | Protein-coding gene | 5,472 | 7,016 | 1,545 bp | + | 46.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,017 | 7,087 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,093 | 7,161 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,173 | 7,863 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,864 | 7,937 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,939 | 8,106 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,097 | 8,780 | 684 bp | + | 46.2% |
| COX3 | Protein-coding gene | 8,780 | 9,564 | 785 bp | + | 47.8% |
| tRNA-Gly | Transfer RNA | 9,565 | 9,637 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,638 | 9,986 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,987 | 10,055 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,056 | 10,352 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,346 | 11,726 | 1,381 bp | + | 45.0% |
| tRNA-His | Transfer RNA | 11,727 | 11,796 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,864 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,865 | 11,936 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,937 | 13,772 | 1,836 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,768 | 14,289 | 522 bp | − | 49.8% |
| tRNA-Glu | Transfer RNA | 14,290 | 14,358 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,364 | 15,504 | 1,141 bp | + | 45.9% |
| tRNA-Thr | Transfer RNA | 15,505 | 15,574 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,574 | 15,644 | 71 bp | − | – |
| D-loop | Control region | 15,645 | 16,926 | 1,282 bp | – | 36.9% |