MitoAge

Thunnus alalunga

Albacore

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Maximum lifespan
13 yr
AnAge record
mtDNA size
16,527 bp
RefSeq NC_005317.1
GC content
46.12%
Whole genome
Non-coding
941 bp
D-loop 866 bp

Where Albacore sits among 2,335 species

Whole-genome GC content against maximum lifespan. Albacore has the 1,346th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Albacore
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,527 bp
GC skew (G − C) / (G + C)
−0.277
AT skew (A − T) / (A + T)
+0.054

Life history

Maximum lifespan
13 years
Adult weight
33.2 kg
Female sexual maturity
5 years
Male sexual maturity
5 years
Litter or clutch size
2,000,000
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04360)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,527 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,692 bp
All tRNA1,539 bp
D-loop866 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.1%27.0%15.0%32.0%46.97%−0.362−0.017
ND2NADH dehydrogenase subunit 21,047 bp26.6%23.4%14.2%35.8%50.05%−0.431+0.063
COX1Cytochrome c oxidase subunit I1,551 bp25.5%28.6%18.4%27.5%45.91%−0.197−0.056
COX2Cytochrome c oxidase subunit II691 bp28.5%27.4%16.4%27.8%44.14%−0.259+0.021
ATP8ATP synthase F0 subunit 8168 bp33.3%21.4%11.9%33.3%45.24%−0.474+0.217
ATP6ATP synthase F0 subunit 6684 bp27.0%29.1%13.6%30.3%43.86%−0.380−0.036
COX3Cytochrome c oxidase subunit III786 bp27.1%26.0%16.0%30.9%46.95%−0.317+0.022
ND3NADH dehydrogenase subunit 3351 bp24.2%24.5%15.4%35.9%51.28%−0.400−0.006
ND4LNADH dehydrogenase subunit 4L297 bp22.2%27.6%14.8%35.4%50.17%−0.409−0.108
ND4NADH dehydrogenase subunit 41,381 bp27.7%26.1%14.9%31.2%46.13%−0.353+0.030
ND5NADH dehydrogenase subunit 51,839 bp28.1%25.5%14.1%32.2%46.38%−0.390+0.049
ND6NADH dehydrogenase subunit 6522 bp37.2%18.0%13.8%31.0%44.83%−0.385+0.347
CYTBCytochrome b1,141 bp24.6%28.6%15.2%31.6%46.80%−0.352−0.074
12S rRNA12S ribosomal RNA947 bp29.8%21.2%22.4%26.6%49.00%−0.086+0.168
16S rRNA16S ribosomal RNA1,692 bp33.3%20.9%20.4%25.4%45.75%−0.109+0.229
D-loopControl region (D-loop)866 bp31.3%31.1%15.1%22.5%37.64%−0.196+0.004

Codon usage

Counts per codon, darker is more frequent

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU69
UUC166
Leu L17.0%
UUA64
UUG9
CUU146
CUC136
CUA236
CUG58
Ile I7.0%
AUU130
AUC137
Met M4.1%
AUA64
AUG93
Val V6.0%
GUU64
GUC61
GUA83
GUG19
Ser S6.3%
UCU46
UCC59
UCA77
UCG4
AGU6
AGC48
Pro P5.9%
CCU66
CCC74
CCA80
CCG6
Thr T7.9%
ACU50
ACC109
ACA126
ACG15
Ala A9.4%
GCU73
GCC159
GCA118
GCG7
Tyr Y2.9%
UAU30
UAC79
His H2.8%
CAU28
CAC79
Gln Q2.5%
CAA77
CAG17
Asn N3.1%
AAU28
AAC91
Lys K1.9%
AAA71
AAG2
Asp D2.0%
GAU17
GAC60
Glu E2.8%
GAA83
GAG22
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA110
UGG9
Arg R2.0%
CGU7
CGC7
CGA52
CGG10
Gly G6.2%
GGU34
GGC69
GGA91
GGG44
Stop 0.3%
UAA9
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_005317.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region1866866 bp–37.6%
tRNA-PheTransfer RNA86793468 bp+–
12S rRNARibosomal RNA9351,881947 bp+49.0%
tRNA-ValTransfer RNA1,8821,95372 bp+–
16S rRNARibosomal RNA1,9543,6451,692 bp+45.8%
tRNA-Leu (UUR)Transfer RNA3,6463,71974 bp+–
ND1Protein-coding gene3,7204,694975 bp+47.0%
tRNA-IleTransfer RNA4,6994,76971 bp+–
tRNA-GlnTransfer RNA4,7694,83971 bp−–
tRNA-MetTransfer RNA4,8394,90769 bp+–
ND2Protein-coding gene4,9085,9541,047 bp+50.1%
tRNA-TrpTransfer RNA5,9546,02370 bp+–
tRNA-AlaTransfer RNA6,0256,09369 bp−–
tRNA-AsnTransfer RNA6,0956,16874 bp−–
tRNA-CysTransfer RNA6,2046,27168 bp−–
tRNA-TyrTransfer RNA6,2726,33968 bp−–
COX1Protein-coding gene6,3417,8911,551 bp+45.9%
tRNA-Ser (UCN)Transfer RNA7,8927,96271 bp−–
tRNA-AspTransfer RNA7,9668,03873 bp+–
COX2Protein-coding gene8,0478,737691 bp+44.1%
tRNA-LysTransfer RNA8,7388,81174 bp+–
ATP8Protein-coding gene8,8138,980168 bp+45.2%
ATP6Protein-coding gene8,9719,654684 bp+43.9%
COX3Protein-coding gene9,65410,439786 bp+47.0%
tRNA-GlyTransfer RNA10,43910,50971 bp+–
ND3Protein-coding gene10,51010,860351 bp+51.3%
tRNA-ArgTransfer RNA10,86010,92869 bp+–
ND4LProtein-coding gene10,92911,225297 bp+50.2%
ND4Protein-coding gene11,21912,5991,381 bp+46.1%
tRNA-HisTransfer RNA12,60012,66970 bp+–
tRNA-Ser (AGY)Transfer RNA12,67012,73768 bp+–
tRNA-Leu (CUN)Transfer RNA12,74212,81473 bp+–
ND5Protein-coding gene12,81514,6531,839 bp+46.4%
ND6Protein-coding gene14,65015,171522 bp−44.8%
tRNA-GluTransfer RNA15,17315,24169 bp−–
CYTBProtein-coding gene15,24616,3861,141 bp+46.8%
tRNA-ThrTransfer RNA16,38716,45872 bp+–
tRNA-ProTransfer RNA16,45816,51558 bp+–

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