MitoAge

Thunnus maccoyii

Southern bluefin tuna

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Maximum lifespan
20 yr
AnAge record
mtDNA size
16,527 bp
RefSeq NC_014101.1
GC content
46.26%
Whole genome
Non-coding
930 bp
D-loop 865 bp

Where Southern bluefin tuna sits among 2,335 species

Whole-genome GC content against maximum lifespan. Southern bluefin tuna has the 899th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Southern bluefin tuna
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,527 bp
GC skew (G − C) / (G + C)
−0.275
AT skew (A − T) / (A + T)
+0.058

Life history

Maximum lifespan
20 years
Adult weight
143 kg
Female sexual maturity
8.5 years
Male sexual maturity
8.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04362)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,527 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA2,692 bp
All tRNA1,551 bp
D-loop865 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp25.6%26.3%15.2%32.5%47.89%−0.363−0.012
ND2NADH dehydrogenase subunit 21,046 bp26.4%23.4%14.1%36.0%50.19%−0.436+0.060
COX1Cytochrome c oxidase subunit I1,551 bp25.3%28.2%18.4%27.1%45.93%−0.193−0.054
COX2Cytochrome c oxidase subunit II691 bp28.2%26.9%16.5%28.1%44.70%−0.260+0.024
ATP8ATP synthase F0 subunit 8168 bp33.3%21.4%11.9%33.3%45.24%−0.474+0.217
ATP6ATP synthase F0 subunit 6684 bp27.5%27.8%12.7%30.7%44.00%−0.414−0.005
COX3Cytochrome c oxidase subunit III785 bp26.8%26.6%16.3%29.9%46.42%−0.295+0.002
ND3NADH dehydrogenase subunit 3349 bp23.5%25.2%16.0%35.2%51.29%−0.374−0.035
ND4LNADH dehydrogenase subunit 4L297 bp22.6%28.6%14.8%33.0%48.30%−0.380−0.118
ND4NADH dehydrogenase subunit 41,381 bp27.2%25.6%15.4%31.8%47.17%−0.349+0.029
ND5NADH dehydrogenase subunit 51,839 bp27.9%25.8%14.2%31.8%46.13%−0.381+0.040
ND6NADH dehydrogenase subunit 6522 bp37.7%17.6%13.2%31.4%44.64%−0.408+0.363
CYTBCytochrome b1,141 bp24.5%28.5%14.9%31.0%46.41%−0.351−0.074
12S rRNA12S ribosomal RNA947 bp29.9%20.9%22.3%26.6%49.05%−0.089+0.177
16S rRNA16S ribosomal RNA2,692 bp30.5%22.7%18.7%27.9%46.69%−0.196+0.147
D-loopControl region (D-loop)865 bp31.0%28.3%14.9%22.0%38.34%−0.191+0.045

Codon usage

Counts per codon, darker is more frequent

3,754 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU69
UUC161
Leu L17.0%
UUA65
UUG7
CUU144
CUC135
CUA234
CUG53
Ile I7.0%
AUU131
AUC132
Met M4.2%
AUA62
AUG94
Val V6.0%
GUU62
GUC63
GUA77
GUG22
Ser S6.4%
UCU45
UCC62
UCA73
UCG6
AGU8
AGC46
Pro P5.9%
CCU63
CCC71
CCA83
CCG4
Thr T7.8%
ACU46
ACC113
ACA122
ACG13
Ala A9.4%
GCU71
GCC157
GCA120
GCG6
Tyr Y2.9%
UAU32
UAC76
His H2.8%
CAU27
CAC79
Gln Q2.5%
CAA70
CAG23
Asn N3.1%
AAU26
AAC91
Lys K1.9%
AAA69
AAG3
Asp D1.9%
GAU18
GAC55
Glu E2.8%
GAA88
GAG17
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA105
UGG13
Arg R2.0%
CGU4
CGC10
CGA52
CGG10
Gly G6.2%
GGU35
GGC63
GGA90
GGG46
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_014101.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,015947 bp+49.1%
tRNA-ValTransfer RNA1,0161,08873 bp+–
16S rRNARibosomal RNA1,0893,7802,692 bp+46.7%
tRNA-Leu (UUR)Transfer RNA2,7812,85474 bp+–
ND1Protein-coding gene2,8553,829975 bp+47.9%
tRNA-IleTransfer RNA3,8343,90471 bp+–
tRNA-GluTransfer RNA3,9043,97471 bp−–
tRNA-MetTransfer RNA3,9744,04269 bp+–
ND2Protein-coding gene4,0435,0881,046 bp+50.2%
tRNA-TrpTransfer RNA5,0895,15870 bp+–
tRNA-AlaTransfer RNA5,1605,22869 bp−–
tRNA-AsnTransfer RNA5,2315,30373 bp−–
tRNA-CysTransfer RNA5,3395,40668 bp−–
tRNA-TyrTransfer RNA5,4075,47468 bp−–
COX1Protein-coding gene5,4767,0261,551 bp+45.9%
tRNA-Ser (UCN)Transfer RNA7,0277,09771 bp−–
tRNA-AspTransfer RNA7,1017,17373 bp+–
COX2Protein-coding gene7,1827,872691 bp+44.7%
tRNA-LysTransfer RNA7,8737,94674 bp+–
ATP8Protein-coding gene7,9488,115168 bp+45.2%
ATP6Protein-coding gene8,1068,789684 bp+44.0%
COX3Protein-coding gene8,7899,573785 bp+46.4%
tRNA-GlyTransfer RNA9,5749,64471 bp+–
ND3Protein-coding gene9,6459,993349 bp+51.3%
tRNA-ArgTransfer RNA9,99410,06269 bp+–
ND4LProtein-coding gene10,06410,360297 bp+48.3%
ND4Protein-coding gene10,35411,7341,381 bp+47.2%
tRNA-HisTransfer RNA11,73511,80470 bp+–
tRNA-Ser (AGY)Transfer RNA11,80511,87268 bp+–
tRNA-Leu (CUN)Transfer RNA11,87711,94973 bp+–
ND5Protein-coding gene11,95013,7881,839 bp+46.1%
ND6Protein-coding gene13,78514,306522 bp−44.6%
tRNA-GlnTransfer RNA14,30814,37669 bp−–
CYTBProtein-coding gene14,38115,5211,141 bp+46.4%
tRNA-ThrTransfer RNA15,52215,59372 bp+–
tRNA-ProTransfer RNA15,59315,66270 bp−–
D-loopControl region15,66316,527865 bp–38.3%

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