Thyrsites atun
Atun
GC content
45.85%
Whole genome
Non-coding
865 bp
D-loop 732 bp
Where Atun sits among 2,335 species
Whole-genome GC content against maximum lifespan. Atun has the 1,610th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,494 bp
- GC skew (G − C) / (G + C)
- −0.242
- AT skew (A − T) / (A + T)
- +0.003
Life history
- Maximum lifespan
- 10 years
- Adult weight
- 3.3 kg
- Female sexual maturity
- 2.7 years
- Male sexual maturity
- 2.7 years
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04168)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,494 bp
Protein-coding11,408 bp
12S rRNA959 bp
16S rRNA1,701 bp
All tRNA1,561 bp
D-loop732 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.92% | −0.321 | −0.088 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.24% | −0.441 | −0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.65% | −0.189 | −0.110 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.241 | −0.030 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.281 | 0.000 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.03% | −0.279 | −0.117 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.64% | −0.246 | −0.109 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.361 | −0.189 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.365 | −0.208 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.334 | −0.022 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.49% | −0.315 | +0.002 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.271 | +0.341 | |||||
| CYTBCytochrome b | 1,141 bp | 47.50% | −0.255 | −0.169 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 47.13% | −0.106 | +0.191 | |||||
| 16S rRNA16S ribosomal RNA | 1,701 bp | 45.21% | −0.111 | +0.245 | |||||
| D-loopControl region (D-loop) | 732 bp | 35.52% | −0.185 | −0.025 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU124
UUC116
Leu L16.9%
UUA103
UUG32
CUU165
CUC120
CUA158
CUG64
Ile I7.2%
AUU168
AUC106
Met M4.3%
AUA87
AUG76
Val V5.6%
GUU64
GUC52
GUA69
GUG27
Ser S6.5%
UCU43
UCC78
UCA57
UCG12
AGU10
AGC46
Pro P5.9%
CCU57
CCC103
CCA47
CCG18
Thr T7.9%
ACU53
ACC119
ACA98
ACG29
Ala A9.3%
GCU75
GCC159
GCA101
GCG19
Tyr Y3.2%
UAU42
UAC78
His H2.8%
CAU22
CAC85
Gln Q2.4%
CAA67
CAG23
Asn N3.1%
AAU36
AAC83
Lys K1.9%
AAA58
AAG16
Asp D1.9%
GAU16
GAC57
Glu E2.7%
GAA67
GAG34
Cys C0.7%
UGU9
UGC18
Trp W3.1%
UGA86
UGG31
Arg R2.1%
CGU8
CGC14
CGA40
CGG18
Gly G6.2%
GGU30
GGC90
GGA59
GGG58
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_066972.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 65 | 65 bp | + | – |
| 12S rRNA | Ribosomal RNA | 66 | 1,024 | 959 bp | + | 47.1% |
| tRNA-Val | Transfer RNA | 1,025 | 1,094 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,795 | 1,701 bp | + | 45.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,796 | 2,868 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,869 | 3,843 | 975 bp | + | 48.9% |
| tRNA-Ile | Transfer RNA | 3,850 | 3,919 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,920 | 3,990 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,990 | 4,059 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,060 | 5,105 | 1,046 bp | + | 49.2% |
| tRNA-Trp | Transfer RNA | 5,106 | 5,175 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,177 | 5,245 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,247 | 5,322 | 76 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,377 | 5,443 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,444 | 5,513 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,515 | 7,065 | 1,551 bp | + | 45.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,066 | 7,136 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,143 | 7,215 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,219 | 7,909 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,910 | 7,984 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,986 | 8,153 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,144 | 8,827 | 684 bp | + | 45.0% |
| COX3 | Protein-coding gene | 8,828 | 9,612 | 785 bp | + | 47.6% |
| tRNA-Gly | Transfer RNA | 9,613 | 9,685 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,686 | 10,034 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,035 | 10,104 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,105 | 10,401 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,395 | 11,775 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,776 | 11,845 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,846 | 11,916 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,926 | 11,998 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,000 | 13,838 | 1,839 bp | + | 46.5% |
| ND6 | Protein-coding gene | 13,835 | 14,356 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,357 | 14,427 | 71 bp | − | – |
| CYTB | Protein-coding gene | 14,479 | 15,619 | 1,141 bp | + | 47.5% |
| tRNA-Thr | Transfer RNA | 15,620 | 15,694 | 75 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,691 | 15,763 | 73 bp | − | – |
| D-loop | Control region | 15,763 | 16,494 | 732 bp | – | 35.5% |