Todus mexicanus
Puerto Rican tody
GC content
46.75%
Whole genome
Non-coding
1,517 bp
Including the D-loop
Where Puerto Rican tody sits among 2,335 species
Whole-genome GC content against maximum lifespan. Puerto Rican tody has the 1,306th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,998 bp
- GC skew (G − C) / (G + C)
- −0.405
- AT skew (A − T) / (A + T)
- +0.095
Life history
- Maximum lifespan
- 14 years
- Adult weight
- 5.9 g
- Female sexual maturity
- 363 days
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00629)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,998 bp
Protein-coding11,387 bp
12S rRNA980 bp
16S rRNA1,587 bp
All tRNA1,542 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 987 bp | 48.84% | −0.452 | −0.006 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 47.64% | −0.588 | +0.103 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.74% | −0.325 | −0.011 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 46.35% | −0.388 | +0.117 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.711 | +0.217 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.569 | +0.077 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.19% | −0.368 | +0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.00% | −0.477 | +0.061 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.461 | −0.034 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,377 bp | 46.99% | −0.561 | +0.093 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 46.59% | −0.525 | +0.133 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.591 | +0.500 | |||||
| CYTBCytochrome b | 1,143 bp | 46.28% | −0.478 | +0.016 | |||||
| 12S rRNA12S ribosomal RNA | 980 bp | 49.80% | −0.197 | +0.232 | |||||
| 16S rRNA16S ribosomal RNA | 1,587 bp | 47.26% | −0.197 | +0.223 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU65
UUC155
Leu L18.0%
UUA62
UUG14
CUU72
CUC197
CUA303
CUG37
Ile I7.3%
AUU85
AUC191
Met M4.0%
AUA116
AUG37
Val V4.5%
GUU33
GUC66
GUA55
GUG16
Ser S7.8%
UCU43
UCC116
UCA78
UCG8
AGU3
AGC49
Pro P6.1%
CCU38
CCC113
CCA74
CCG5
Thr T9.2%
ACU63
ACC150
ACA132
ACG3
Ala A7.6%
GCU55
GCC137
GCA83
GCG14
Tyr Y2.9%
UAU24
UAC86
His H2.7%
CAU22
CAC82
Gln Q2.6%
CAA91
CAG8
Asn N3.4%
AAU29
AAC102
Lys K2.2%
AAA79
AAG3
Asp D1.8%
GAU17
GAC50
Glu E2.4%
GAA78
GAG14
Cys C0.7%
UGU5
UGC23
Trp W2.9%
UGA95
UGG14
Arg R1.9%
CGU8
CGC26
CGA32
CGG5
Gly G6.0%
GGU22
GGC97
GGA78
GGG32
Stop 0.3%
UAA7
UAG1
AGA1
AGG2
Genome map
37 annotated features in NC_052799.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,048 | 980 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,048 | 1,116 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,116 | 2,702 | 1,587 bp | + | 47.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,702 | 2,775 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,787 | 3,773 | 987 bp | + | 48.8% |
| tRNA-Ile | Transfer RNA | 3,772 | 3,843 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,855 | 3,925 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,925 | 3,993 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,994 | 5,032 | 1,039 bp | + | 47.6% |
| tRNA-Trp | Transfer RNA | 5,033 | 5,103 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,105 | 5,173 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,188 | 5,260 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,263 | 5,329 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,330 | 5,399 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,401 | 6,951 | 1,551 bp | + | 48.7% |
| tRNA-Ser (UCN) | Transfer RNA | 6,943 | 7,016 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,019 | 7,087 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,089 | 7,772 | 684 bp | + | 46.4% |
| tRNA-Lys | Transfer RNA | 7,774 | 7,845 | 72 bp | + | – |
| ATP8 | Protein-coding gene | 7,847 | 8,014 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,005 | 8,688 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,688 | 9,471 | 784 bp | + | 47.2% |
| tRNA-Gly | Transfer RNA | 9,472 | 9,540 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,541 | 9,892 | 352 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 9,897 | 9,965 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,967 | 10,263 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,257 | 11,633 | 1,377 bp | + | 47.0% |
| tRNA-His | Transfer RNA | 11,635 | 11,703 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,704 | 11,769 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,769 | 11,839 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,840 | 13,657 | 1,818 bp | + | 46.6% |
| CYTB | Protein-coding gene | 13,667 | 14,809 | 1,143 bp | + | 46.3% |
| tRNA-Thr | Transfer RNA | 14,810 | 14,879 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,886 | 14,956 | 71 bp | − | – |
| ND6 | Protein-coding gene | 14,966 | 15,487 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 15,491 | 15,560 | 70 bp | − | – |