Tomistoma schlegelii

False gharial

Maximum lifespan

24.7 yr

AnAge record

mtDNA size

16,345 bp

RefSeq NC_011074.1

GC content

41.70%

Whole genome

Non-coding

1,269 bp

D-loop 1,023 bp

Where False gharial sits among 2,335 species

Whole-genome GC content against maximum lifespan. False gharial has the 661st longest lifespan of them.

This species
Other reptiles
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,345 bp

GC skew (G − C) / (G + C): −0.326
AT skew (A − T) / (A + T): +0.073

Life history

Maximum lifespan: 24.7 years
Adult weight: 119 kg
Female sexual maturity: 20 years
Male sexual maturity: 20 years
Gestation or incubation: 102 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03264)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,345 bp

Protein-coding11,395 bp

12S rRNA547 bp

16S rRNA1,605 bp

All tRNA1,541 bp

D-loop1,023 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Tomistoma schlegelii genes

ND1NADH dehydrogenase subunit 1	963 bp	29.5%	29.6%	13.4%	27.5%	40.91%	−0.345	−0.002
ND2NADH dehydrogenase subunit 2	1,044 bp	30.1%	27.9%	11.0%	31.0%	42.05%	−0.476	+0.038
COX1Cytochrome c oxidase subunit I	1,584 bp	29.7%	27.6%	15.5%	27.2%	42.74%	−0.273	+0.036
COX2Cytochrome c oxidase subunit II	688 bp	32.7%	25.7%	14.8%	26.7%	41.57%	−0.287	+0.119
ATP8ATP synthase F0 subunit 8	162 bp	32.7%	28.4%	7.4%	31.5%	38.89%	−0.619	+0.071
ATP6ATP synthase F0 subunit 6	696 bp	32.6%	28.9%	10.8%	27.7%	38.51%	−0.440	+0.061
COX3Cytochrome c oxidase subunit III	784 bp	28.3%	25.3%	15.8%	30.6%	46.43%	−0.319	+0.057
ND3NADH dehydrogenase subunit 3	348 bp	28.7%	32.2%	15.2%	23.9%	39.08%	−0.221	−0.057
ND4LNADH dehydrogenase subunit 4L	294 bp	27.2%	34.0%	9.2%	29.6%	38.78%	−0.526	−0.111
ND4NADH dehydrogenase subunit 4	1,371 bp	30.4%	28.8%	12.2%	28.6%	40.77%	−0.403	+0.027
ND5NADH dehydrogenase subunit 5	1,839 bp	30.1%	26.8%	13.8%	29.4%	43.12%	−0.362	+0.057
ND6NADH dehydrogenase subunit 6	528 bp	35.2%	19.9%	11.9%	33.0%	44.89%	−0.468	+0.278
CYTBCytochrome b	1,165 bp	29.3%	26.4%	12.0%	32.3%	44.29%	−0.457	+0.051
12S rRNA12S ribosomal RNA	547 bp	31.8%	21.4%	21.2%	25.6%	46.80%	−0.094	+0.196
16S rRNA16S ribosomal RNA	1,605 bp	33.8%	22.1%	18.6%	25.5%	44.17%	−0.157	+0.210
D-loopControl region (D-loop)	1,023 bp	36.2%	36.0%	9.7%	18.2%	27.86%	−0.305	+0.003

Codon usage

Counts per codon, darker is more frequent

Gene

3,821 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU106

UUC124

Leu L16.7%

UUA129

UUG17

CUU89

CUC109

CUA246

CUG47

Ile I7.8%

AUU167

AUC131

Met M5.9%

AUA190

AUG35

Val V5.0%

GUU40

GUC33

GUA102

GUG16

Ser S7.2%

UCU40

UCC76

UCA90

UCG8

AGU21

AGC40

Pro P5.8%

CCU35

CCC52

CCA123

CCG11

Thr T8.4%

ACU53

ACC128

ACA133

ACG8

Ala A7.9%

GCU58

GCC136

GCA92

GCG14

Tyr Y3.0%

UAU48

UAC68

His H2.7%

CAU23

CAC80

Gln Q2.4%

CAA76

CAG15

Asn N3.3%

AAU44

AAC81

Lys K2.5%

AAA81

AAG15

Asp D1.9%

GAU27

GAC47

Glu E2.4%

GAA73

GAG17

Cys C0.8%

UGU12

UGC18

Trp W2.6%

UGA81

UGG20

Arg R1.9%

CGU7

CGC15

CGA42

CGG8

Gly G5.6%

GGU31

GGC56

GGA95

GGG32

Stop 0.3%

UAA6

UAG1

AGA0

AGG3

Genome map

38 annotated features in NC_011074.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Tomistoma schlegelii (NC_011074.1)
Feature	Type	Start	End	Length	Strand	GC
12S rRNA	Ribosomal RNA	1	547	547 bp	+	46.8%
tRNA-Val	Transfer RNA	548	617	70 bp	+	–
16S rRNA	Ribosomal RNA	619	2,223	1,605 bp	+	44.2%
tRNA-Leu (UUR)	Transfer RNA	2,224	2,299	76 bp	+	–
ND1	Protein-coding gene	2,300	3,262	963 bp	+	40.9%
tRNA-Ile	Transfer RNA	3,261	3,332	72 bp	+	–
tRNA-Gln	Transfer RNA	3,331	3,401	71 bp	−	–
tRNA-Met	Transfer RNA	3,406	3,472	67 bp	+	–
ND2	Protein-coding gene	3,477	4,520	1,044 bp	+	42.1%
tRNA-Trp	Transfer RNA	4,523	4,596	74 bp	+	–
tRNA-Ala	Transfer RNA	4,597	4,667	71 bp	−	–
tRNA-Asn	Transfer RNA	4,668	4,740	73 bp	−	–
tRNA-Cys	Transfer RNA	4,744	4,801	58 bp	−	–
tRNA-Tyr	Transfer RNA	4,815	4,882	68 bp	−	–
COX1	Protein-coding gene	4,884	6,467	1,584 bp	+	42.7%
tRNA-Ser (UCN)	Transfer RNA	6,458	6,527	70 bp	−	–
tRNA-Asp	Transfer RNA	6,531	6,601	71 bp	+	–
COX2	Protein-coding gene	6,602	7,289	688 bp	+	41.6%
tRNA-Lys	Transfer RNA	7,290	7,361	72 bp	+	–
ATP8	Protein-coding gene	7,364	7,525	162 bp	+	38.9%
ATP6	Protein-coding gene	7,504	8,199	696 bp	+	38.5%
COX3	Protein-coding gene	8,199	8,982	784 bp	+	46.4%
tRNA-Gly	Transfer RNA	8,983	9,052	70 bp	+	–
ND3	Protein-coding gene	9,053	9,400	348 bp	+	39.1%
tRNA-Arg	Transfer RNA	9,411	9,480	70 bp	+	–
ND4L	Protein-coding gene	9,484	9,777	294 bp	+	38.8%
ND4	Protein-coding gene	9,771	11,141	1,371 bp	+	40.8%
tRNA-Ser (AGY)	Transfer RNA	11,167	11,231	65 bp	+	–
tRNA-His	Transfer RNA	11,250	11,318	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,343	11,415	73 bp	+	–
ND5	Protein-coding gene	11,417	13,255	1,839 bp	+	43.1%
ND6	Protein-coding gene	13,215	13,742	528 bp	−	44.9%
tRNA-Glu	Transfer RNA	13,744	13,813	70 bp	−	–
CYTB	Protein-coding gene	13,824	14,988	1,165 bp	+	44.3%
tRNA-Thr	Transfer RNA	15,029	15,100	72 bp	+	–
tRNA-Pro	Transfer RNA	15,109	15,176	68 bp	−	–
tRNA-Phe	Transfer RNA	15,196	15,268	73 bp	+	–
D-loop	Control region	15,323	16,345	1,023 bp	–	27.9%