Totoaba macdonaldi
Totoaba
GC content
47.53%
Whole genome
Non-coding
888 bp
Including the D-loop
Where Totoaba sits among 2,335 species
Whole-genome GC content against maximum lifespan. Totoaba has the 1,245th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,488 bp
- GC skew (G − C) / (G + C)
- −0.306
- AT skew (A − T) / (A + T)
- +0.034
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,488 bp
Protein-coding11,413 bp
12S rRNA949 bp
16S rRNA1,697 bp
All tRNA1,546 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.368 | −0.072 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.57% | −0.516 | +0.022 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 49.20% | −0.196 | −0.092 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.86% | −0.323 | +0.029 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.486 | +0.184 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 49.12% | −0.429 | −0.115 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.66% | −0.309 | −0.092 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.72% | −0.424 | −0.163 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.430 | −0.110 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.67% | −0.385 | −0.004 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.22% | −0.435 | +0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.441 | +0.433 | |||||
| CYTBCytochrome b | 1,141 bp | 50.92% | −0.391 | −0.086 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 47.95% | −0.081 | +0.186 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 46.38% | −0.139 | +0.215 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU95
UUC144
Leu L18.1%
UUA83
UUG24
CUU158
CUC211
CUA156
CUG56
Ile I7.0%
AUU143
AUC123
Met M3.9%
AUA77
AUG72
Val V5.2%
GUU50
GUC67
GUA58
GUG22
Ser S6.0%
UCU31
UCC82
UCA61
UCG3
AGU12
AGC38
Pro P5.8%
CCU40
CCC128
CCA42
CCG11
Thr T8.1%
ACU52
ACC132
ACA117
ACG9
Ala A9.2%
GCU53
GCC192
GCA94
GCG13
Tyr Y2.9%
UAU40
UAC69
His H2.8%
CAU22
CAC85
Gln Q2.6%
CAA83
CAG15
Asn N3.2%
AAU32
AAC88
Lys K1.9%
AAA65
AAG8
Asp D2.0%
GAU20
GAC55
Glu E2.7%
GAA70
GAG33
Cys C0.7%
UGU4
UGC22
Trp W3.2%
UGA99
UGG21
Arg R2.0%
CGU5
CGC20
CGA46
CGG7
Gly G6.4%
GGU32
GGC106
GGA59
GGG47
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
37 annotated features in NC_082752.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,018 | 1,089 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,786 | 1,697 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,860 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,909 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,047 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,093 | 1,046 bp | + | 48.6% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,411 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,481 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,039 | 1,557 bp | + | 49.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,177 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 44.9% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 49.1% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 48.7% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,648 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 50.7% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 49.7% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 46.2% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,382 | 15,522 | 1,141 bp | + | 50.9% |
| tRNA-Thr | Transfer RNA | 15,523 | 15,594 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |