Trachinotus carolinus
Florida pompano
GC content
45.32%
Whole genome
Non-coding
915 bp
D-loop 849 bp
Where Florida pompano sits among 2,335 species
Whole-genome GC content against maximum lifespan. Florida pompano has the 1,840th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,544 bp
- GC skew (G − C) / (G + C)
- −0.282
- AT skew (A − T) / (A + T)
- +0.049
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,544 bp
Protein-coding11,407 bp
12S rRNA950 bp
16S rRNA1,722 bp
All tRNA1,551 bp
D-loop849 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.41% | −0.335 | −0.030 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.46% | −0.486 | +0.025 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.36% | −0.192 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.311 | +0.031 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.83% | −0.481 | +0.143 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.428 | −0.032 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.55% | −0.280 | −0.045 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.309 | −0.166 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.429 | −0.107 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.33% | −0.339 | −0.038 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.75% | −0.390 | +0.047 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.02% | −0.430 | +0.436 | |||||
| CYTBCytochrome b | 1,141 bp | 46.98% | −0.377 | −0.035 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 46.84% | −0.128 | +0.232 | |||||
| 16S rRNA16S ribosomal RNA | 1,722 bp | 44.66% | −0.118 | +0.221 | |||||
| D-loopControl region (D-loop) | 849 bp | 37.22% | −0.158 | +0.032 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU100
UUC142
Leu L17.4%
UUA84
UUG18
CUU138
CUC175
CUA201
CUG45
Ile I7.4%
AUU137
AUC146
Met M4.1%
AUA90
AUG65
Val V5.8%
GUU60
GUC65
GUA75
GUG20
Ser S6.3%
UCU38
UCC63
UCA74
UCG11
AGU9
AGC43
Pro P5.8%
CCU50
CCC78
CCA73
CCG19
Thr T7.7%
ACU56
ACC114
ACA110
ACG12
Ala A8.8%
GCU81
GCC143
GCA95
GCG15
Tyr Y2.8%
UAU39
UAC69
His H3.0%
CAU28
CAC87
Gln Q2.4%
CAA76
CAG17
Asn N3.2%
AAU38
AAC83
Lys K2.0%
AAA72
AAG5
Asp D2.1%
GAU25
GAC54
Glu E2.6%
GAA82
GAG16
Cys C0.6%
UGU5
UGC18
Trp W3.2%
UGA110
UGG10
Arg R2.0%
CGU10
CGC14
CGA40
CGG13
Gly G6.4%
GGU53
GGC57
GGA89
GGG45
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_024184.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,018 | 950 bp | + | 46.8% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,812 | 1,722 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,812 | 2,885 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,886 | 3,860 | 975 bp | + | 48.4% |
| tRNA-Ile | Transfer RNA | 3,863 | 3,932 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,932 | 4,002 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,002 | 4,070 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,071 | 5,116 | 1,046 bp | + | 46.5% |
| tRNA-Trp | Transfer RNA | 5,117 | 5,187 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,189 | 5,257 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,259 | 5,331 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,374 | 5,440 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,441 | 5,511 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,513 | 7,063 | 1,551 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,064 | 7,134 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,138 | 7,207 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,216 | 7,906 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,907 | 7,981 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,983 | 8,150 | 168 bp | + | 45.8% |
| ATP6 | Protein-coding gene | 8,141 | 8,824 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,824 | 9,608 | 785 bp | + | 49.6% |
| tRNA-Gly | Transfer RNA | 9,609 | 9,680 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,681 | 10,029 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,030 | 10,098 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,099 | 10,395 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,389 | 11,769 | 1,381 bp | + | 45.3% |
| tRNA-His | Transfer RNA | 11,770 | 11,838 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,839 | 11,907 | 69 bp | − | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,910 | 11,982 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,983 | 13,821 | 1,839 bp | + | 44.8% |
| ND6 | Protein-coding gene | 13,818 | 14,339 | 522 bp | − | 45.0% |
| tRNA-Glu | Transfer RNA | 14,340 | 14,408 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,413 | 15,553 | 1,141 bp | + | 47.0% |
| tRNA-Thr | Transfer RNA | 15,554 | 15,624 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,624 | 15,694 | 71 bp | − | – |
| D-loop | Control region | 15,696 | 16,544 | 849 bp | – | 37.2% |