Trachinotus ovatus
Pompano
GC content
44.74%
Whole genome
Non-coding
929 bp
D-loop 864 bp
Where Pompano sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pompano has the 2,020th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,563 bp
- GC skew (G − C) / (G + C)
- −0.290
- AT skew (A − T) / (A + T)
- +0.051
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,563 bp
Protein-coding11,406 bp
12S rRNA951 bp
16S rRNA1,725 bp
All tRNA1,558 bp
D-loop864 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 974 bp | 46.82% | −0.355 | −0.031 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.56% | −0.495 | +0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.84% | −0.203 | −0.059 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.56% | −0.302 | +0.021 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.479 | +0.116 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.01% | −0.422 | −0.034 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.41% | −0.300 | −0.032 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.13% | −0.292 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.405 | −0.154 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.97% | −0.372 | −0.024 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,838 bp | 43.09% | −0.414 | +0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.412 | +0.422 | |||||
| CYTBCytochrome b | 1,141 bp | 46.63% | −0.361 | −0.057 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 47.00% | −0.132 | +0.230 | |||||
| 16S rRNA16S ribosomal RNA | 1,725 bp | 44.87% | −0.119 | +0.222 | |||||
| D-loopControl region (D-loop) | 864 bp | 36.46% | −0.181 | +0.038 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU102
UUC142
Leu L17.4%
UUA86
UUG17
CUU140
CUC173
CUA204
CUG42
Ile I7.5%
AUU148
AUC136
Met M4.0%
AUA97
AUG56
Val V5.7%
GUU66
GUC59
GUA82
GUG11
Ser S6.3%
UCU40
UCC59
UCA84
UCG5
AGU16
AGC37
Pro P5.8%
CCU54
CCC81
CCA72
CCG12
Thr T7.8%
ACU50
ACC124
ACA115
ACG8
Ala A8.6%
GCU77
GCC138
GCA103
GCG10
Tyr Y2.8%
UAU45
UAC63
His H3.0%
CAU35
CAC78
Gln Q2.4%
CAA74
CAG19
Asn N3.2%
AAU41
AAC81
Lys K2.0%
AAA72
AAG5
Asp D2.1%
GAU23
GAC56
Glu E2.6%
GAA77
GAG21
Cys C0.6%
UGU8
UGC15
Trp W3.2%
UGA113
UGG7
Arg R2.0%
CGU13
CGC12
CGA46
CGG6
Gly G6.4%
GGU42
GGC69
GGA93
GGG40
Stop 0.1%
UAA4
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022707.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,019 | 951 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,020 | 1,092 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,817 | 1,725 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,817 | 2,891 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,891 | 3,864 | 974 bp | + | 46.8% |
| tRNA-Ile | Transfer RNA | 3,868 | 3,937 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,937 | 4,008 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 4,007 | 4,076 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,076 | 5,121 | 1,046 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,122 | 5,193 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,194 | 5,263 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,264 | 5,337 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,378 | 5,445 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,445 | 5,515 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,517 | 7,067 | 1,551 bp | + | 43.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,067 | 7,139 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,142 | 7,212 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,220 | 7,910 | 691 bp | + | 43.6% |
| tRNA-Lys | Transfer RNA | 7,911 | 7,986 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,987 | 8,154 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,145 | 8,828 | 684 bp | + | 44.0% |
| COX3 | Protein-coding gene | 8,828 | 9,612 | 785 bp | + | 48.4% |
| tRNA-Gly | Transfer RNA | 9,613 | 9,685 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,685 | 10,033 | 349 bp | + | 46.1% |
| tRNA-Arg | Transfer RNA | 10,034 | 10,096 | 63 bp | + | – |
| ND4L | Protein-coding gene | 10,103 | 10,399 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,393 | 11,773 | 1,381 bp | + | 45.0% |
| tRNA-His | Transfer RNA | 11,774 | 11,843 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,843 | 11,910 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,914 | 11,987 | 74 bp | + | – |
| ND5 | Protein-coding gene | 11,987 | 13,824 | 1,838 bp | + | 43.1% |
| ND6 | Protein-coding gene | 13,822 | 14,343 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,344 | 14,413 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,417 | 15,557 | 1,141 bp | + | 46.6% |
| tRNA-Thr | Transfer RNA | 15,558 | 15,629 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,629 | 15,699 | 71 bp | − | – |
| D-loop | Control region | 15,700 | 16,563 | 864 bp | – | 36.5% |